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    LOC102218595 transcriptional repressor p66 alpha-like [ Xiphophorus maculatus (southern platyfish) ]

    Gene ID: 102218595, updated on 22-Oct-2023
    Gene symbol
    LOC102218595
    Gene description
    transcriptional repressor p66 alpha-like
    See related
    Ensembl:ENSXMAG00000019339
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus maculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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    Try the new Transcripts and proteins table
    See LOC102218595 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    102 current X_maculatus-5.0-male (GCF_002775205.1) 6 NC_036448.1 (12232948..12257210, complement)
    101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372193.1 (3176595..3188136, complement)

    Chromosome 6 - NC_036448.1Genomic Context describing neighboring genes Neighboring gene cold inducible RNA binding protein a Neighboring gene NADH:ubiquinone oxidoreductase subunit A13 Neighboring gene armadillo repeat containing 6 Neighboring gene solute carrier family 25 member 42

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NuRD complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    transcriptional repressor p66 alpha-like

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_maculatus-5.0-male Primary Assembly

    Genomic

    1. NC_036448.1 Reference X_maculatus-5.0-male Primary Assembly

      Range
      12232948..12257210 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014475997.2 → XP_014331483.1  transcriptional repressor p66 alpha-like isoform X5

      UniProtKB/TrEMBL
      A0A3B5Q053
      Related
      ENSXMAP00000025253.1, ENSXMAT00000031123.1
      Conserved Domains (2) summary
      pfam00320
      Location:494 → 530
      GATA; GATA zinc finger
      pfam16563
      Location:217 → 253
      P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

    2. XM_023335711.1 → XP_023191479.1  transcriptional repressor p66 alpha-like isoform X5

      UniProtKB/TrEMBL
      A0A3B5Q053
      Conserved Domains (2) summary
      pfam00320
      Location:494 → 530
      GATA; GATA zinc finger
      pfam16563
      Location:217 → 253
      P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

    3. XM_023335709.1 → XP_023191477.1  transcriptional repressor p66 alpha-like isoform X5

      UniProtKB/TrEMBL
      A0A3B5Q053
      Conserved Domains (2) summary
      pfam00320
      Location:494 → 530
      GATA; GATA zinc finger
      pfam16563
      Location:217 → 253
      P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

    4. XM_023335707.1 → XP_023191475.1  transcriptional repressor p66 alpha-like isoform X3

      UniProtKB/TrEMBL
      A0A3B5Q053
      Conserved Domains (2) summary
      pfam00320
      Location:496 → 532
      GATA; GATA zinc finger
      pfam16563
      Location:219 → 255
      P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

    5. XM_023335710.1 → XP_023191478.1  transcriptional repressor p66 alpha-like isoform X5

      UniProtKB/TrEMBL
      A0A3B5Q053
      Conserved Domains (2) summary
      pfam00320
      Location:494 → 530
      GATA; GATA zinc finger
      pfam16563
      Location:217 → 253
      P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

    6. XM_023335708.1 → XP_023191476.1  transcriptional repressor p66 alpha-like isoform X4

      UniProtKB/TrEMBL
      A0A3B5Q053
      Conserved Domains (2) summary
      pfam00320
      Location:496 → 532
      GATA; GATA zinc finger
      pfam16563
      Location:227 → 263
      P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

    7. XM_023335704.1 → XP_023191472.1  transcriptional repressor p66 alpha-like isoform X1

      UniProtKB/TrEMBL
      A0A3B5Q053
      Conserved Domains (2) summary
      pfam00320
      Location:504 → 540
      GATA; GATA zinc finger
      pfam16563
      Location:227 → 263
      P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

    8. XM_023335706.1 → XP_023191474.1  transcriptional repressor p66 alpha-like isoform X2

      UniProtKB/TrEMBL
      A0A3B5Q053
      Related
      ENSXMAP00000019385.2, ENSXMAT00000019413.2
      Conserved Domains (2) summary
      pfam00320
      Location:497 → 533
      GATA; GATA zinc finger
      pfam16563
      Location:227 → 263
      P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

    9. XM_023335713.1 → XP_023191481.1  transcriptional repressor p66 alpha-like isoform X7

      UniProtKB/TrEMBL
      M4AY40
      Conserved Domains (2) summary
      pfam00320
      Location:504 → 540
      GATA; GATA zinc finger
      pfam16563
      Location:227 → 263
      P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

    10. XM_023335712.1 → XP_023191480.1  transcriptional repressor p66 alpha-like isoform X6

      UniProtKB/TrEMBL
      A0A3B5Q053
      Conserved Domains (2) summary
      pfam00320
      Location:504 → 540
      GATA; GATA zinc finger
      pfam16563
      Location:227 → 263
      P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2
    Nucleotide Protein Strain
    Heading Accession and Version

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