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    tcf3a transcription factor 3a [ Xiphophorus maculatus (southern platyfish) ]

    Gene ID: 102217582, updated on 10-Mar-2024

    Summary

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    Gene symbol
    tcf3a
    Gene description
    transcription factor 3a
    See related
    Ensembl:ENSXMAG00000019314
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus maculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
    Orthologs
    zebrafish all
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    Genomic context

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    See tcf3a in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    102 current X_maculatus-5.0-male (GCF_002775205.1) 6 NC_036448.1 (11867296..11896966, complement)
    101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372193.1 (2807595..2832235, complement)

    Chromosome 6 - NC_036448.1Genomic Context describing neighboring genes Neighboring gene cytochrome b-c1 complex subunit 10-like Neighboring gene methyl-CpG binding domain protein 3a Neighboring gene one cut homeobox 3b Neighboring gene leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor E2-alpha-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_maculatus-5.0-male Primary Assembly

    Genomic

    1. NC_036448.1 Reference X_maculatus-5.0-male Primary Assembly

      Range
      11867296..11896966 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023335410.1 → XP_023191178.1  transcription factor E2-alpha-like isoform X6

      UniProtKB/TrEMBL
      A0A3B5QPZ5
      Conserved Domains (1) summary
      smart00353
      Location:530 → 583
      HLH; helix loop helix domain

    2. XM_014475977.2 → XP_014331463.1  transcription factor E2-alpha-like isoform X4

      UniProtKB/TrEMBL
      A0A3B5QPZ5
      Conserved Domains (1) summary
      smart00353
      Location:531 → 584
      HLH; helix loop helix domain

    3. XM_023335411.1 → XP_023191179.1  transcription factor E2-alpha-like isoform X7

      UniProtKB/TrEMBL
      A0A3B5QPZ5, A0A3B5QVL0
      Related
      ENSXMAP00000035274.1, ENSXMAT00000024513.1
      Conserved Domains (1) summary
      smart00353
      Location:529 → 582
      HLH; helix loop helix domain

    4. XM_023335408.1 → XP_023191176.1  transcription factor E2-alpha-like isoform X3

      UniProtKB/TrEMBL
      A0A3B5QPZ5
      Conserved Domains (1) summary
      smart00353
      Location:552 → 605
      HLH; helix loop helix domain

    5. XM_023335409.1 → XP_023191177.1  transcription factor E2-alpha-like isoform X5

      UniProtKB/TrEMBL
      A0A3B5QPZ5
      Conserved Domains (1) summary
      smart00353
      Location:530 → 583
      HLH; helix loop helix domain

    6. XM_023335407.1 → XP_023191175.1  transcription factor E2-alpha-like isoform X2

      UniProtKB/TrEMBL
      A0A3B5QPZ5
      Conserved Domains (1) summary
      smart00353
      Location:552 → 605
      HLH; helix loop helix domain

    7. XM_023335405.1 → XP_023191173.1  transcription factor E2-alpha-like isoform X1

      UniProtKB/TrEMBL
      A0A3B5QPZ5, M4AY16
      Related
      ENSXMAP00000019361.1, ENSXMAT00000019389.2
      Conserved Domains (1) summary
      smart00353
      Location:553 → 606
      HLH; helix loop helix domain
    Nucleotide Protein Strain
    Heading Accession and Version

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