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    tbxta T-box transcription factor Ta [ Xiphophorus maculatus (southern platyfish) ]

    Gene ID: 102236170, updated on 10-Mar-2024
    Gene symbol
    tbxta
    Gene description
    T-box transcription factor Ta
    See related
    Ensembl:ENSXMAG00000012033
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus maculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
    Orthologs
    zebrafish all
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    See tbxta in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current X_maculatus-5.0-male (GCF_002775205.1) 13 NC_036455.1 (27649177..27652524, complement)
    101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372335.1 (79364..82008, complement)

    Chromosome 13 - NC_036455.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111610636 Neighboring gene nudC nuclear distribution protein Neighboring gene AT-rich interactive domain 1Ab Neighboring gene uncharacterized LOC111610633

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mesoderm formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in somitogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    brachyury protein homolog A

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    RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_maculatus-5.0-male Primary Assembly

    Genomic

    1. NC_036455.1 Reference X_maculatus-5.0-male Primary Assembly

      Range
      27649177..27652524 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005806184.2 → XP_005806241.1  brachyury protein homolog A

      UniProtKB/TrEMBL
      A0A3B5Q2X7, M4AC56
      Related
      ENSXMAP00000012050.2, ENSXMAT00000012066.2
      Conserved Domains (1) summary
      pfam00907
      Location:37 → 212
      T-box
    Nucleotide Protein Strain
    Heading Accession and Version

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    Molecular Biology Databases