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    LOC102221076 LIM homeobox transcription factor 1-beta [ Xiphophorus maculatus (southern platyfish) ]

    Gene ID: 102221076, updated on 22-Oct-2023
    Gene symbol
    LOC102221076
    Gene description
    LIM homeobox transcription factor 1-beta
    See related
    Ensembl:ENSXMAG00000007520
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus maculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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    Try the new Transcripts and proteins table
    See LOC102221076 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current X_maculatus-5.0-male (GCF_002775205.1) 8 NC_036450.1 (27494803..27537545, complement)
    101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372469.1 (252141..295085)

    Chromosome 8 - NC_036450.1Genomic Context describing neighboring genes Neighboring gene NIMA-related kinase 6 Neighboring gene proteasome 20S subunit beta 7 Neighboring gene nuclear receptor subfamily 5, group A, member 1b Neighboring gene multivesicular body subunit 12B Neighboring gene uncharacterized LOC111609454 Neighboring gene MAPK associated protein 1

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    LIM homeobox transcription factor 1-beta; LIM/homeobox protein LMX-1.2

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_maculatus-5.0-male Primary Assembly

    Genomic

    1. NC_036450.1 Reference X_maculatus-5.0-male Primary Assembly

      Range
      27494803..27537545 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023337829.1 → XP_023193597.1  LIM/homeobox protein LMX-1.2 isoform X2

      Conserved Domains (3) summary
      cd09371
      Location:59 → 111
      LIM1_Lmx1b; The first LIM domain of Lmx1b
      cl02475
      Location:118 → 173
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
      pfam00046
      Location:224 → 277
      Homeobox; Homeobox domain

    2. XM_023337828.1 → XP_023193596.1  LIM homeobox transcription factor 1-beta isoform X1

      UniProtKB/TrEMBL
      M3ZZA1
      Related
      ENSXMAP00000007545.2, ENSXMAT00000007553.2
      Conserved Domains (3) summary
      cd09371
      Location:59 → 111
      LIM1_Lmx1b; The first LIM domain of Lmx1b
      cl02475
      Location:118 → 173
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
      pfam00046
      Location:224 → 277
      Homeobox; Homeobox domain
    Nucleotide Protein Strain
    Heading Accession and Version

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    Molecular Biology Databases