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    smarce1 SWI/SNF related BAF chromatin remodeling complex subunit E1 [ Xiphophorus maculatus (southern platyfish) ]

    Gene ID: 102226691, updated on 29-Sep-2024
    Gene symbol
    smarce1
    Gene description
    SWI/SNF related BAF chromatin remodeling complex subunit E1
    See related
    Ensembl:ENSXMAG00000002642
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus maculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
    Orthologs
    all
    Try the new Gene page
    Try the new Transcripts and proteins table
    See smarce1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current X_maculatus-5.0-male (GCF_002775205.1) 16 NC_036458.1 (24226141..24238640, complement)
    101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372574.1 (221948..233702)

    Chromosome 16 - NC_036458.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111611564 Neighboring gene von Willebrand factor C domain-containing protein 2-like Neighboring gene putative all-trans-retinol 13,14-reductase Neighboring gene MAGUK p55 scaffold protein 2a

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosomal DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like
    Names
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_maculatus-5.0-male Primary Assembly

    Genomic

    1. NC_036458.1 Reference X_maculatus-5.0-male Primary Assembly

      Range
      24226141..24238640 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023349307.1 → XP_023205075.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like isoform X2

      UniProtKB/TrEMBL
      A0A3B5REH5, M3ZKA3
      Related
      ENSXMAP00000002645.2, ENSXMAT00000002650.2
      Conserved Domains (2) summary
      cd01390
      Location:68 → 129
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      cl26386
      Location:350 → 436
      DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

    2. XM_023349306.1 → XP_023205074.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like isoform X1

      UniProtKB/TrEMBL
      A0A3B5REH5
      Conserved Domains (2) summary
      cd01390
      Location:68 → 133
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      cl26386
      Location:354 → 440
      DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    Nucleotide Protein Strain
    Heading Accession and Version

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