U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    satb1a SATB homeobox 1a [ Xiphophorus maculatus (southern platyfish) ]

    Gene ID: 102234013, updated on 10-Mar-2024
    Gene symbol
    satb1a
    Gene description
    SATB homeobox 1a
    See related
    Ensembl:ENSXMAG00000000865
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus maculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
    Orthologs
    all
    Try the new Gene page
    Try the new Transcripts and proteins table
    See satb1a in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current X_maculatus-5.0-male (GCF_002775205.1) 13 NC_036455.1 (21065372..21085939, complement)
    101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372261.1 (1198744..1213753)

    Chromosome 13 - NC_036455.1Genomic Context describing neighboring genes Neighboring gene inactive phospholipase C-like protein 2 Neighboring gene TBC1 domain family, member 5 Neighboring gene potassium voltage-gated channel, subfamily H (eag-related), member 8 Neighboring gene glycoprotein (transmembrane) nmb

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    DNA-binding protein SATB1-like

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_maculatus-5.0-male Primary Assembly

    Genomic

    1. NC_036455.1 Reference X_maculatus-5.0-male Primary Assembly

      Range
      21065372..21085939 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023344521.1 → XP_023200289.1  DNA-binding protein SATB1-like

      UniProtKB/TrEMBL
      M3ZF78
      Related
      ENSXMAP00000000870.2, ENSXMAT00000000873.2
      Conserved Domains (4) summary
      smart00389
      Location:774 → 820
      HOX; Homeodomain
      pfam02376
      Location:399 → 468
      CUT; CUT domain
      pfam16534
      Location:69 → 167
      ULD; Ubiquitin-like oligomerization domain of SATB
      pfam16557
      Location:173 → 242
      CUTL; CUT1-like DNA-binding domain of SATB
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases