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    LOC101061478 SAM pointed domain-containing Ets transcription factor [ Takifugu rubripes (torafugu) ]

    Gene ID: 101061478, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC101061478
    Gene description
    SAM pointed domain-containing Ets transcription factor
    See related
    Ensembl:ENSTRUG00000011048
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Takifugu rubripes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
    Also known as
    spdef
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    Genomic context

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    See LOC101061478 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current fTakRub1.2 (GCF_901000725.2) 3 NC_042287.1 (14341964..14347202)
    101 previous assembly FUGU5 (GCF_000180615.1) 3 NC_018892.1 (11052640..11055072)

    Chromosome 3 - NC_042287.1Genomic Context describing neighboring genes Neighboring gene TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor Neighboring gene bridge-like lipid transfer protein family member 3A Neighboring gene inflammation and lipid regulator with UBA-like and NBR1-like domains Neighboring gene uncharacterized LOC105416283 Neighboring gene protein kinase C and casein kinase substrate in neurons 1 Neighboring gene small integral membrane protein 29 Neighboring gene high mobility group AT-hook 1a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SAM pointed domain-containing Ets transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fTakRub1.2 Primary Assembly

    Genomic

    1. NC_042287.1 Reference fTakRub1.2 Primary Assembly

      Range
      14341964..14347202
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003963484.3 → XP_003963533.3  SAM pointed domain-containing Ets transcription factor

      UniProtKB/TrEMBL
      H2TT88
      Related
      ENSTRUP00000027896.3, ENSTRUT00000028006.3
      Conserved Domains (2) summary
      smart00413
      Location:232 → 318
      ETS; erythroblast transformation specific domain
      cl15755
      Location:122 → 202
      SAM_superfamily; SAM (Sterile alpha motif )
    Nucleotide Protein
    Heading Accession and Version

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