U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    HOXD9 homeobox D9 [ Taeniopygia guttata (zebra finch) ]

    Gene ID: 100226556, updated on 26-May-2026
    Gene symbol
    HOXD9
    Gene description
    homeobox D9
    Locus tag
    ACNU9V_029490
    See related
    Ensembl:ENSTGUG00000008955
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Taeniopygia guttata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
    Orthologs
    all
    Try the new Gene page
    Try the new Transcripts and proteins table
    See HOXD9 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2025_04 current bTaeGut7.mat (GCF_048771995.1) 7 NC_133032.1 (17724516..17728677)
    106 previous assembly bTaeGut1.4.pri (GCF_003957565.2) 7 NC_044219.2 (16337597..16340351)

    Chromosome 7 - NC_133032.1Genomic Context describing neighboring genes Neighboring gene homeobox D11 Neighboring gene homeobox D10 Neighboring gene homeobox D8 Neighboring gene homeobox D3 Neighboring gene homeobox D4 Neighboring gene microRNA mir-10a

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in anterior/posterior pattern specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in embryonic skeletal system morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proximal/distal pattern formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    homeobox protein Hox-D9
    Names
    homeobox protein Hox-D9 isoform 1-T1
    homeobox protein Hox-D9 isoform 2-T2

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_048771995.1-RS_2025_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bTaeGut7.mat

    Genomic

    1. NC_133032.1 Reference bTaeGut7.mat

      Range
      17724516..17728677
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030277528.4 → XP_030133388.4  homeobox protein Hox-D9

      UniProtKB/TrEMBL
      H0ZF57
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials