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    LOC100220846 lethal(3)malignant brain tumor-like protein 4 [ Taeniopygia guttata (zebra finch) ]

    Gene ID: 100220846, updated on 1-May-2025
    Gene symbol
    LOC100220846
    Gene description
    lethal(3)malignant brain tumor-like protein 4
    See related
    Ensembl:ENSTGUG00000000758
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Taeniopygia guttata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
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    See LOC100220846 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2025_04 current bTaeGut7.mat (GCF_048771995.1) 23 NC_133048.1 (6589418..6631691)
    106 previous assembly bTaeGut1.4.pri (GCF_003957565.2) 23 NC_044235.2 (6464613..6507195)

    Chromosome 23 - NC_133048.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type U Neighboring gene mitochondrial trans-2-enoyl-CoA reductase Neighboring gene serine and arginine rich splicing factor 4 Neighboring gene transmembrane protein 200B Neighboring gene erythrocyte membrane protein band 4.1

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    lethal(3)malignant brain tumor-like protein 4

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_048771995.1-RS_2025_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bTaeGut7.mat

    Genomic

    1. NC_133048.1 Reference bTaeGut7.mat

      Range
      6589418..6631691
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030290551.4 → XP_030146411.3  lethal(3)malignant brain tumor-like protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A674GWZ1

    2. XM_072917869.1 → XP_072773970.1  lethal(3)malignant brain tumor-like protein 4 isoform X4

      UniProtKB/TrEMBL
      A0A674GWZ1

    3. XM_072917870.1 → XP_072773971.1  lethal(3)malignant brain tumor-like protein 4 isoform X6

      UniProtKB/TrEMBL
      A0A674HTW9

    4. XM_030290555.4 → XP_030146415.3  lethal(3)malignant brain tumor-like protein 4 isoform X5

      UniProtKB/TrEMBL
      A0A674GWZ1

    5. XM_030290553.4 → XP_030146413.3  lethal(3)malignant brain tumor-like protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A674GWZ1

    6. XM_030290554.4 → XP_030146414.3  lethal(3)malignant brain tumor-like protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A674GWZ1

    7. XM_030290556.4 → XP_030146416.1  lethal(3)malignant brain tumor-like protein 4 isoform X8

      UniProtKB/TrEMBL
      H0YR69
      Related
      ENSTGUP00000000777.2
      Conserved Domains (3) summary
      cd09582
      Location:620 → 685
      SAM_Scm-like-3MBT3,4; SAM domain of Scm-like-3MBT3,4 proteins of Polycomb group
      smart00561
      Location:321 → 413
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam01530
      Location:427 → 455
      zf-C2HC; Zinc finger, C2HC type

    8. XM_072917872.1 → XP_072773973.1  lethal(3)malignant brain tumor-like protein 4 isoform X9

      UniProtKB/TrEMBL
      H0YR69

    9. XM_072917871.1 → XP_072773972.1  lethal(3)malignant brain tumor-like protein 4 isoform X7

      UniProtKB/TrEMBL
      H0YR69
    Nucleotide Protein
    Heading Accession and Version

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