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    LOC116947176 estrogen-related receptor gamma-like [ Petromyzon marinus (sea lamprey) ]

    Gene ID: 116947176, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC116947176
    Gene description
    estrogen-related receptor gamma-like
    See related
    EnsemblRapid:ENSPMAG00000008137
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Petromyzon marinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon
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    Genomic context

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    See LOC116947176 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current kPetMar1.pri (GCF_010993605.1) 29 NC_046097.1 (3165949..3573858, complement)

    Chromosome 29 - NC_046097.1Genomic Context describing neighboring genes Neighboring gene dual specificity protein phosphatase 10-like Neighboring gene H2.0-like homeobox protein Neighboring gene transforming growth factor beta-2 proprotein-like Neighboring gene uncharacterized LOC116947095

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_046097.1 Chromosome 29 Reference kPetMar1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear steroid receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables steroid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    estrogen-related receptor gamma-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Petromyzon marinus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference kPetMar1.pri Primary Assembly

    Genomic

    1. NC_046097.1 Reference kPetMar1.pri Primary Assembly

      Range
      3165949..3573858 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032962633.1 → XP_032818524.1  estrogen-related receptor gamma-like isoform X1

      UniProtKB/TrEMBL
      A0AAJ7X249
      Conserved Domains (2) summary
      cd06946
      Location:321 → 540
      NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
      cd07170
      Location:203 → 297
      NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

    2. XM_032962634.1 → XP_032818525.1  estrogen-related receptor gamma-like isoform X1

      UniProtKB/TrEMBL
      A0AAJ7X249
      Conserved Domains (2) summary
      cd06946
      Location:321 → 540
      NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
      cd07170
      Location:203 → 297
      NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

    3. XM_032962635.1 → XP_032818526.1  estrogen-related receptor gamma-like isoform X1

      UniProtKB/TrEMBL
      A0AAJ7X249
      Conserved Domains (2) summary
      cd06946
      Location:321 → 540
      NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
      cd07170
      Location:203 → 297
      NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

    4. XM_032962636.1 → XP_032818527.1  estrogen-related receptor gamma-like isoform X1

      UniProtKB/TrEMBL
      A0AAJ7X249
      Conserved Domains (2) summary
      cd06946
      Location:321 → 540
      NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
      cd07170
      Location:203 → 297
      NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

    5. XM_032962637.1 → XP_032818528.1  estrogen-related receptor gamma-like isoform X1

      UniProtKB/TrEMBL
      A0AAJ7X249
      Conserved Domains (2) summary
      cd06946
      Location:321 → 540
      NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
      cd07170
      Location:203 → 297
      NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

    6. XM_032962638.1 → XP_032818529.1  estrogen-related receptor gamma-like isoform X2

      UniProtKB/TrEMBL
      A0AAJ7TIK8
      Related
      ENSPMAP00000029420.1, ENSPMAT00000040884.1
      Conserved Domains (2) summary
      cd06946
      Location:295 → 514
      NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
      cd07170
      Location:177 → 271
      NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

    7. XM_032962631.1 → XP_032818522.1  estrogen-related receptor gamma-like isoform X1

      UniProtKB/TrEMBL
      A0AAJ7X249
      Conserved Domains (2) summary
      cd06946
      Location:321 → 540
      NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
      cd07170
      Location:203 → 297
      NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

    8. XM_032962632.1 → XP_032818523.1  estrogen-related receptor gamma-like isoform X1

      UniProtKB/TrEMBL
      A0AAJ7X249
      Related
      ENSPMAP00000034779.1, ENSPMAT00000055914.1
      Conserved Domains (2) summary
      cd06946
      Location:321 → 540
      NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
      cd07170
      Location:203 → 297
      NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

    9. XM_032962639.1 → XP_032818530.1  estrogen-related receptor gamma-like isoform X3

      UniProtKB/TrEMBL
      A0AAJ7TIK0
      Conserved Domains (2) summary
      cd06946
      Location:276 → 495
      NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
      cd07170
      Location:158 → 252
      NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers
    Nucleotide Protein
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