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    LOC116939588 uncharacterized LOC116939588 [ Petromyzon marinus (sea lamprey) ]

    Gene ID: 116939588, updated on 11-Aug-2025
    Gene symbol
    LOC116939588
    Gene description
    uncharacterized LOC116939588
    See related
    EnsemblRapid:ENSPMAG00000006315
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Petromyzon marinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon
    NEW
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    See LOC116939588 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2025_08 current UKy_Petmar_22M1.pri1.0 (GCF_048934315.1) 6 NC_133672.1 (7711713..7778655)
    100 previous assembly kPetMar1.pri (GCF_010993605.1) 6 NC_046074.1 (11461477..11526735, complement)

    Chromosome 6 - NC_133672.1Genomic Context describing neighboring genes Neighboring gene translin associated factor X Neighboring gene gremlin-2-like Neighboring gene uncharacterized LOC142922160 Neighboring gene toll-like receptor 5 Neighboring gene amnion associated transmembrane protein

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    uncharacterized protein LOC116939588

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_048934315.1-RS_2025_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UKy_Petmar_22M1.pri1.0 Primary Assembly

    Genomic

    1. NC_133672.1 Reference UKy_Petmar_22M1.pri1.0 Primary Assembly

      Range
      7711713..7778655
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032948167.2 → XP_032804058.1  uncharacterized protein LOC116939588

      UniProtKB/TrEMBL
      A0AAJ7SR22, S4RP19
      Conserved Domains (2) summary
      pfam01448
      Location:82 → 135
      ELM2; ELM2 domain
      cl21498
      Location:171 → 214
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    2. XM_032948170.2 → XP_032804061.1  uncharacterized protein LOC116939588

      UniProtKB/TrEMBL
      A0AAJ7SR22, S4RP19
      Conserved Domains (2) summary
      pfam01448
      Location:82 → 135
      ELM2; ELM2 domain
      cl21498
      Location:171 → 214
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    3. XM_032948166.2 → XP_032804057.1  uncharacterized protein LOC116939588

      UniProtKB/TrEMBL
      A0AAJ7SR22, S4RP19
      Conserved Domains (2) summary
      pfam01448
      Location:82 → 135
      ELM2; ELM2 domain
      cl21498
      Location:171 → 214
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    4. XM_032948169.2 → XP_032804060.1  uncharacterized protein LOC116939588

      UniProtKB/TrEMBL
      A0AAJ7SR22, S4RP19
      Related
      ENSPMAP00000006955.2
      Conserved Domains (2) summary
      pfam01448
      Location:82 → 135
      ELM2; ELM2 domain
      cl21498
      Location:171 → 214
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    5. XM_032948171.2 → XP_032804062.1  uncharacterized protein LOC116939588

      UniProtKB/TrEMBL
      A0AAJ7SR22, S4RP19
      Conserved Domains (2) summary
      pfam01448
      Location:82 → 135
      ELM2; ELM2 domain
      cl21498
      Location:171 → 214
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    Nucleotide Protein
    Heading Accession and Version

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