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    vdr vitamin D (1,25- dihydroxyvitamin D3) receptor [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 100169845, updated on 10-Feb-2026
    Gene symbol
    vdr
    Gene description
    vitamin D (1,25- dihydroxyvitamin D3) receptor
    See related
    EnsemblRapid:ENSORLG00000016402
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Also known as
    vdrbeta
    Try the new Gene page
    Try the new Transcripts and proteins table
    See vdr in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2026_01 current Olatipes_Hd-rR_3.1 (GCF_053564925.1) 5 NC_136241.1 (32304173..32332258, complement)
    103 previous assembly ASM223467v1 (GCF_002234675.1) 5 NC_019863.2 (29684512..29713204, complement)

    Chromosome 5 - NC_136241.1Genomic Context describing neighboring genes Neighboring gene twist-related protein 2-like Neighboring gene histone deacetylase 7 Neighboring gene tensin-2 Neighboring gene transfer RNA glutamine (anticodon UUG)

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. Paralogous vitamin D receptors in teleosts: transition of nuclear receptor function. Howarth DL, et al. Endocrinology, 2008 May. PMID 18258682, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables vitamin D response element binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    vitamin D3 receptor
    Names
    vitamin D receptor beta

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001128517.1 → NP_001121989.1  vitamin D3 receptor

      See identical proteins and their annotated locations for NP_001121989.1

      Status: PROVISIONAL

      Source sequence(s)
      EU403116
      UniProtKB/TrEMBL
      A0A3P9J2P2, A0A3P9KUJ5, B2CCA1, H2MP78
      Related
      ENSORLP00000087411.1, ENSORLT00000062685.1
      Conserved Domains (2) summary
      cd06955
      Location:16 → 112
      NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers
      cl11397
      Location:128 → 424
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

    RefSeqs of Annotated Genomes: GCF_053564925.1-RS_2026_01

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Olatipes_Hd-rR_3.1

    Genomic

    1. NC_136241.1 Reference Olatipes_Hd-rR_3.1

      Range
      32304173..32332258 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011475296.4 → XP_011473598.1  vitamin D3 receptor isoform X1

      See identical proteins and their annotated locations for XP_011473598.1

      UniProtKB/TrEMBL
      A0A3P9J2P2, A0A3P9KUJ5, B2CCA1, H2MP78
      Related
      ENSORLP00000020536.2
      Conserved Domains (2) summary
      cd06955
      Location:16 → 112
      NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers
      cl11397
      Location:128 → 424
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

    2. XM_078946699.1 → XP_078802825.1  vitamin D3 receptor isoform X1

    RNA

    1. XR_908823.4 RNA Sequence

    2. XR_013655854.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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    Molecular Biology Databases
    Research Materials