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    onecut3b one cut homeobox 3b [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101171777, updated on 12-Sep-2024

    Summary

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    Gene symbol
    onecut3b
    Gene description
    one cut homeobox 3b
    See related
    EnsemblRapid:ENSORLG00000015269
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Orthologs
    zebrafish all
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    Genomic context

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    See onecut3b in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 17 NC_019875.2 (22517829..22526968)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 17 NC_019875.1 (23103233..23112352)

    Chromosome 17 - NC_019875.2Genomic Context describing neighboring genes Neighboring gene cytochrome b-c1 complex subunit 10 Neighboring gene transcription factor 3a Neighboring gene leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3 Neighboring gene uncharacterized LOC101163608

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hepatocyte nuclear factor 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019875.2 Reference ASM223467v1 Primary Assembly

      Range
      22517829..22526968
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004079307.2 → XP_004079355.1  hepatocyte nuclear factor 6 isoform X1

      UniProtKB/TrEMBL
      A0A3P9I8G7, A0A3P9L6F6, H2MKB8
      Related
      ENSORLP00000019128.2, ENSORLT00000019129.3
      Conserved Domains (2) summary
      smart00389
      Location:374 → 429
      HOX; Homeodomain
      pfam02376
      Location:279 → 351
      CUT; CUT domain

    2. XM_020711019.1 → XP_020566678.1  hepatocyte nuclear factor 6 isoform X2

      UniProtKB/TrEMBL
      A0A3B3HIE0, A0A3P9I7Z6, A0A3P9MG26
      Related
      ENSORLP00000031060.1, ENSORLT00000030236.2
      Conserved Domains (1) summary
      pfam02376
      Location:277 → 351
      CUT; CUT domain
    Nucleotide Protein
    Heading Accession and Version

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