U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    atf5a activating transcription factor 5a [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101175499, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    atf5a
    Gene description
    activating transcription factor 5a
    See related
    EnsemblRapid:ENSORLG00000007564
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Orthologs
    zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See atf5a in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 14 NC_019872.2 (15279222..15282493)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 14 NC_019872.1 (16276949..16278720)

    Chromosome 14 - NC_019872.2Genomic Context describing neighboring genes Neighboring gene histone H2AX Neighboring gene pleckstrin homology-like domain, family B, member 1a Neighboring gene serine/threonine kinase 36 (fused homolog, Drosophila) Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif, 15a

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC101175499

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019872.2 Reference ASM223467v1 Primary Assembly

      Range
      15279222..15282493
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011483557.3 → XP_011481859.2  uncharacterized protein LOC101175499 isoform X1

      UniProtKB/TrEMBL
      A0A3P9HLC8, H2LTQ9
      Related
      ENSORLP00000009479.2, ENSORLT00000009480.3
      Conserved Domains (1) summary
      cd14692
      Location:427 → 489
      bZIP_ATF4; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-4 (ATF-4) and similar proteins: a DNA-binding and dimerization domain

    2. XM_023962602.1 → XP_023818370.1  uncharacterized protein LOC101175499 isoform X2

      UniProtKB/TrEMBL
      A0A3B3IHB0
      Conserved Domains (1) summary
      cd14692
      Location:373 → 435
      bZIP_ATF4; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-4 (ATF-4) and similar proteins: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials