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    LOC101161725 transcription factor 12 [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101161725, updated on 11-Feb-2026
    Gene symbol
    LOC101161725
    Gene description
    transcription factor 12
    See related
    EnsemblRapid:ENSORLG00000005330
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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    See LOC101161725 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2026_01 current Olatipes_Hd-rR_3.1 (GCF_053564925.1) 6 NC_136242.1 (18281719..18293419, complement)
    103 previous assembly ASM223467v1 (GCF_002234675.1) 6 NC_019864.2 (15283828..15295545, complement)

    Chromosome 6 - NC_136242.1Genomic Context describing neighboring genes Neighboring gene cingulin-like protein 1 Neighboring gene aquaporin 9a Neighboring gene regulatory factor X7b Neighboring gene protogenin B

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    transcription factor 12

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    RefSeqs of Annotated Genomes: GCF_053564925.1-RS_2026_01

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Olatipes_Hd-rR_3.1

    Genomic

    1. NC_136242.1 Reference Olatipes_Hd-rR_3.1

      Range
      18281719..18293419 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011476017.4 → XP_011474319.1  transcription factor 12

      UniProtKB/TrEMBL
      A0A3P9IUT0, H2LL11
      Related
      ENSORLP00000006719.2
      Conserved Domains (1) summary
      smart00353
      Location:398 → 451
      HLH; helix loop helix domain
    Nucleotide Protein Strain
    Heading Accession and Version

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