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    LOC101173402 transcription regulator protein BACH1 [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101173402, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC101173402
    Gene description
    transcription regulator protein BACH1
    See related
    EnsemblRapid:ENSORLG00000003339
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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    Genomic context

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    See LOC101173402 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 13 NC_019871.2 (7818000..7824595)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 13 NC_019871.1 (6930217..6936917)

    Chromosome 13 - NC_019871.2Genomic Context describing neighboring genes Neighboring gene RWD domain containing 2B Neighboring gene ubiquitin specific peptidase 16 Neighboring gene glutamate ionotropic receptor kainate type subunit 1 Neighboring gene claudin-8-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription regulator protein BACH1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019871.2 Reference ASM223467v1 Primary Assembly

      Range
      7818000..7824595
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011482328.3 → XP_011480630.2  transcription regulator protein BACH1 isoform X1

      UniProtKB/TrEMBL
      A0A3P9KXQ4
      Related
      ENSORLP00000029580.2, ENSORLT00000045277.2
      Conserved Domains (2) summary
      cd14719
      Location:501 → 571
      bZIP_BACH; Basic leucine zipper (bZIP) domain of BTB and CNC homolog (BACH) proteins: a DNA-binding and dimerization domain
      pfam00651
      Location:40 → 143
      BTB; BTB/POZ domain

    2. XM_011482329.3 → XP_011480631.1  transcription regulator protein BACH1 isoform X2

      See identical proteins and their annotated locations for XP_011480631.1

      UniProtKB/TrEMBL
      A0A3B3HDE5, A0A3P9KXQ4
      Conserved Domains (2) summary
      cd14719
      Location:487 → 557
      bZIP_BACH; Basic leucine zipper (bZIP) domain of BTB and CNC homolog (BACH) proteins: a DNA-binding and dimerization domain
      pfam00651
      Location:26 → 129
      BTB; BTB/POZ domain

    3. XM_020708115.2 → XP_020563774.1  transcription regulator protein BACH1 isoform X2

      UniProtKB/TrEMBL
      A0A3B3HDE5, A0A3P9KXQ4
      Conserved Domains (2) summary
      cd14719
      Location:487 → 557
      bZIP_BACH; Basic leucine zipper (bZIP) domain of BTB and CNC homolog (BACH) proteins: a DNA-binding and dimerization domain
      pfam00651
      Location:26 → 129
      BTB; BTB/POZ domain
    Nucleotide Protein
    Heading Accession and Version

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