U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC100695813 vitamin D3 receptor B [ Oreochromis niloticus (Nile tilapia) ]

    Gene ID: 100695813, updated on 19-Jun-2025
    Gene symbol
    LOC100695813
    Gene description
    vitamin D3 receptor B
    See related
    Ensembl:ENSONIG00000019378
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oreochromis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
    Try the new Gene page
    Try the new Transcripts and proteins table
    See LOC100695813 in Genome Data Viewer
    Location:
    chromosome: LG5
    Exon count:
    10
    Annotation release Status Assembly LG Location
    RS_2025_06 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG5 NC_031970.2 (26565398..26598252, complement)
    103 previous assembly ASM185804v2 (GCF_001858045.1) LG5 NC_031970.1 (11931698..11964594)

    Linkage Group LG5 - NC_031970.2Genomic Context describing neighboring genes Neighboring gene twist-related protein 2-like Neighboring gene histone deacetylase 7 Neighboring gene uncharacterized LOC102080729 Neighboring gene tensin-2 Neighboring gene transfer RNA glutamine (anticodon UUG)

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables vitamin D response element binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    vitamin D3 receptor B

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_001858045.2-RS_2025_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_niloticus_UMD_NMBU Primary Assembly

    Genomic

    1. NC_031970.2 Reference O_niloticus_UMD_NMBU Primary Assembly

      Range
      26565398..26598252 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003441540.5 → XP_003441588.1  vitamin D3 receptor B

      UniProtKB/TrEMBL
      I3JRS3, I3KTE7
      Related
      ENSONIP00000011568.2, ENSONIT00000011577.2
      Conserved Domains (2) summary
      cd06933
      Location:128 → 424
      NR_LBD_VDR; The ligand binding domain of vitamin D receptors, a member of the nuclear receptor superfamily
      cd06955
      Location:16 → 121
      NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases