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    rarga retinoic acid receptor gamma a [ Oreochromis niloticus (Nile tilapia) ]

    Gene ID: 100709708, updated on 12-Sep-2024

    Summary

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    Gene symbol
    rarga
    Gene description
    retinoic acid receptor gamma a
    See related
    Ensembl:ENSONIG00000012223
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oreochromis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
    Also known as
    rarg
    Orthologs
    zebrafish all
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    Genomic context

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    See rarga in Genome Data Viewer
    Location:
    chromosome: LG20
    Exon count:
    11
    Annotation release Status Assembly LG Location
    104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG20 NC_031984.2 (19346256..19388285, complement)
    103 previous assembly ASM185804v2 (GCF_001858045.1) LG20 NC_031984.1 (25607364..25649401)

    Linkage Group LG20 - NC_031984.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106097774 Neighboring gene uncharacterized LOC102077509 Neighboring gene calcium binding and coiled-coil domain 1a Neighboring gene nuclear receptor subfamily 1 group D member 1 Neighboring gene major facilitator superfamily domain containing 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear glucocorticoid receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to corticotropin-releasing hormone stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retinoic acid receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinoic acid receptor gamma

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_niloticus_UMD_NMBU Primary Assembly

    Genomic

    1. NC_031984.2 Reference O_niloticus_UMD_NMBU Primary Assembly

      Range
      19346256..19388285 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013273144.3 → XP_013128598.1  retinoic acid receptor gamma isoform X1

      UniProtKB/TrEMBL
      A0A669CX73, A0A669DEP2
      Conserved Domains (2) summary
      cd06937
      Location:184 → 414
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:80 → 160
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    2. XM_013273145.3 → XP_013128599.1  retinoic acid receptor gamma isoform X1

      UniProtKB/TrEMBL
      A0A669CX73, A0A669DEP2
      Related
      ENSONIP00000057374.1, ENSONIT00000054325.1
      Conserved Domains (2) summary
      cd06937
      Location:184 → 414
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:80 → 160
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    3. XM_013273146.3 → XP_013128600.1  retinoic acid receptor gamma isoform X2

      UniProtKB/TrEMBL
      A0A669F289, I3K2Q2
      Related
      ENSONIP00000015397.1, ENSONIT00000015410.2
      Conserved Domains (2) summary
      cd06937
      Location:176 → 406
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:72 → 152
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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