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    grhl3 grainyhead-like transcription factor 3 [ Oreochromis niloticus (Nile tilapia) ]

    Gene ID: 100692641, updated on 8-Mar-2024

    Summary

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    Gene symbol
    grhl3
    Gene description
    grainyhead-like transcription factor 3
    See related
    Ensembl:ENSONIG00000003513
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oreochromis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
    Expression
    Biased expression in skin (RPKM 20.7), whole embryo (RPKM 13.6) and 1 other tissue See more
    Orthologs
    human zebrafish all
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    Genomic context

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    Location:
    chromosome: LG19
    Exon count:
    15
    Annotation release Status Assembly LG Location
    104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG19 NC_031983.2 (14260498..14270044)
    103 previous assembly ASM185804v2 (GCF_001858045.1) LG19 NC_031983.1 (15542394..15551939, complement)

    Linkage Group LG19 - NC_031983.2Genomic Context describing neighboring genes Neighboring gene regulator of calcineurin 3 Neighboring gene NIPA like domain containing 3 Neighboring gene uncharacterized LOC109196004 Neighboring gene claudin 23-like Neighboring gene connector enhancer of kinase suppressor of Ras 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
    • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
    • BioProject: PRJNA78915
    • Analysis date: Fri Dec 29 00:23:36 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    grainyhead-like protein 3 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_niloticus_UMD_NMBU Primary Assembly

    Genomic

    1. NC_031983.2 Reference O_niloticus_UMD_NMBU Primary Assembly

      Range
      14260498..14270044
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019348955.2 → XP_019204500.1  grainyhead-like protein 3 homolog isoform X1

    2. XM_013276389.3 → XP_013131843.1  grainyhead-like protein 3 homolog isoform X2

      UniProtKB/TrEMBL
      I3J6D4
      Related
      ENSONIP00000004424.2, ENSONIT00000004426.2
      Conserved Domains (1) summary
      pfam04516
      Location:203 → 391
      CP2; CP2 transcription factor
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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