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    BCL6B BCL6B transcription repressor [ Loxodonta africana (African savanna elephant) ]

    Gene ID: 100662028, updated on 11-Apr-2024
    Gene symbol
    BCL6B
    Gene description
    BCL6B transcription repressor
    See related
    EnsemblRapid:ENSLAFG00000006642
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Loxodonta africana
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
    Orthologs
    all
    Try the new Gene page
    Try the new Transcripts and proteins table
    See BCL6B in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 18 NC_087359.1 (69587169..69596977)
    102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573467.1 (10980467..10984631)

    Chromosome 18 - NC_087359.1Genomic Context describing neighboring genes Neighboring gene ribonuclease K Neighboring gene BPTF associated chromatin complex component 1 Neighboring gene solute carrier family 16 member 13 Neighboring gene solute carrier family 16 member 11

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    B-cell CLL/lymphoma 6 member B protein
    Names
    B cell CLL/lymphoma 6B

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mLoxAfr1.hap2

    Genomic

    1. NC_087359.1 Reference mLoxAfr1.hap2

      Range
      69587169..69596977
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023556370.2 → XP_023412138.1  B-cell CLL/lymphoma 6 member B protein

      Related
      ENSLAFP00000005579.4, ENSLAFT00000006642.4
      Conserved Domains (4) summary
      COG5048
      Location:347 → 400
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:323 → 343
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:28 → 134
      BTB; BTB/POZ domain
      pfam13465
      Location:363 → 388
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases