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    LOC100661000 nuclear body protein SP140-like [ Loxodonta africana (African savanna elephant) ]

    Gene ID: 100661000, updated on 11-Apr-2024
    Gene symbol
    LOC100661000
    Gene description
    nuclear body protein SP140-like
    See related
    EnsemblRapid:ENSLAFG00000002297
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Loxodonta africana
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
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    See LOC100661000 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 6 NC_087347.1 (12249431..12285901)
    102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573475.1 (8739303..8772599)

    Chromosome 6 - NC_087347.1Genomic Context describing neighboring genes Neighboring gene nuclear body protein SP140-like protein Neighboring gene SP110 nuclear body protein Neighboring gene sp110 nuclear body protein-like Neighboring gene uncharacterized LOC104846636 Neighboring gene solute carrier family 16 member 14

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    nuclear body protein SP140-like

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mLoxAfr1.hap2

    Genomic

    1. NC_087347.1 Reference mLoxAfr1.hap2

      Range
      12249431..12285901
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_064286574.1 → XP_064142644.1  nuclear body protein SP140-like isoform X3

    2. XM_064286573.1 → XP_064142643.1  nuclear body protein SP140-like isoform X2

    3. XM_064286572.1 → XP_064142642.1  nuclear body protein SP140-like isoform X1

      Related
      ENSLAFP00000025532.2, ENSLAFT00000033396.2

    4. XM_064286575.1 → XP_064142645.1  nuclear body protein SP140-like isoform X4

    5. XM_064286576.1 → XP_064142646.1  nuclear body protein SP140-like isoform X5

    RNA

    1. XR_010322211.1 RNA Sequence

    2. XR_010322212.1 RNA Sequence

    3. XR_010322210.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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