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    tbx5b T-box transcription factor 5b [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115553327, updated on 17-Mar-2024

    Summary

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    Gene symbol
    tbx5b
    Gene description
    T-box transcription factor 5b
    See related
    Ensembl:ENSGMOG00000009107
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Orthologs
    zebrafish all
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    Genomic context

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    See tbx5b in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 11 NC_044058.1 (29558811..29570427, complement)

    Chromosome 11 - NC_044058.1Genomic Context describing neighboring genes Neighboring gene two pore segment channel 1 Neighboring gene IQ motif containing D Neighboring gene cilia and flagella associated protein 73 Neighboring gene pleckstrin homology domain-containing family A member 2-like Neighboring gene clustered mitochondria protein homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044058.1 Chromosome 11 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cardiac left ventricle formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pattern specification process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    T-box transcription factor TBX5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044058.1 Reference gadMor3.0 Primary Assembly

      Range
      29558811..29570427 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030369465.1 → XP_030225325.1  T-box transcription factor TBX5-like

      UniProtKB/TrEMBL
      A0A8C5F6D8
      Related
      ENSGMOP00000009743.2, ENSGMOT00000010004.2
      Conserved Domains (2) summary
      PHA03247
      Location:251 → 500
      PHA03247; large tegument protein UL36; Provisional
      cd00182
      Location:48 → 236
      TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...
    Nucleotide Protein
    Heading Accession and Version

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