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    LOC115538931 forkhead box protein K2-like [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115538931, updated on 20-Feb-2025

    Summary

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    Gene symbol
    LOC115538931
    Gene description
    forkhead box protein K2-like
    See related
    Ensembl:ENSGMOG00000002370
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC115538931 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) Unplaced Scaffold NW_021964036.1 (42886..49026, complement)

    NW_021964036.1Genomic Context describing neighboring genes Neighboring gene meteorin like, glial cell differentiation regulator Neighboring gene hepatic leukemia factor-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_021964036 Unplaced Scaffold Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome sequence of Atlantic cod reveals a unique immune system. Star B, et al. Nature, 2011 Aug 10. PMID 21832995, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    forkhead box protein K2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NW_021964036.1 Reference gadMor3.0 Primary Assembly

      Range
      42886..49026 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030350144.1 → XP_030206004.1  forkhead box protein K2-like

      UniProtKB/TrEMBL
      A0A8C4YXX9
      Related
      ENSGMOP00000061682.1, ENSGMOT00000067595.1
      Conserved Domains (2) summary
      cd00060
      Location:24 → 112
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      pfam00250
      Location:217 → 303
      Forkhead; Forkhead domain
    Nucleotide Protein
    Heading Accession and Version

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