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    sp3a sp3a transcription factor [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115538879, updated on 17-Mar-2024

    Summary

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    Gene symbol
    sp3a
    Gene description
    sp3a transcription factor
    See related
    Ensembl:ENSGMOG00000001962
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Also known as
    sp3
    Orthologs
    human zebrafish all
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    Genomic context

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    See sp3a in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) Unplaced Scaffold NW_021964012.1 (5655..15512)

    NW_021964012.1Genomic Context describing neighboring genes Neighboring gene cell division cycle associated 7a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_021964012 Unplaced Scaffold Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor Sp3
    Names
    Sp3 transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NW_021964012.1 Reference gadMor3.0 Primary Assembly

      Range
      5655..15512
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030350107.1 → XP_030205967.1  transcription factor Sp3

      UniProtKB/TrEMBL
      A0A8C4YWF0
      Related
      ENSGMOP00000002091.2, ENSGMOT00000002158.2
      Conserved Domains (3) summary
      sd00017
      Location:539 → 561
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:597 → 619
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:583 → 606
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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