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    hoxc1a homeobox C1a [ Gasterosteus aculeatus (three-spined stickleback) ]

    Gene ID: 120829851, updated on 3-Dec-2024

    Summary

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    Gene symbol
    hoxc1a
    Gene description
    homeobox C1a
    See related
    Ensembl:ENSGACG00000009431
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gasterosteus aculeatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Gasterosteus
    Orthologs
    zebrafish all
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    Genomic context

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    See hoxc1a in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current GAculeatus_UGA_version5 (GCF_016920845.1) 12 NC_053223.1 (9252897..9258124, complement)

    Chromosome 12 - NC_053223.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1b Neighboring gene chromobox homolog 5 (HP1 alpha homolog, Drosophila) Neighboring gene homeobox protein Hox-A3-like Neighboring gene homeobox C10a Neighboring gene homeobox C4a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053223.1 Chromosome 12 Reference GAculeatus_UGA_version5 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein Hox-C1a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gasterosteus aculeatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GAculeatus_UGA_version5 Primary Assembly

    Genomic

    1. NC_053223.1 Reference GAculeatus_UGA_version5 Primary Assembly

      Range
      9252897..9258124 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040194373.1 → XP_040050307.1  homeobox protein Hox-C1a

      UniProtKB/TrEMBL
      G3P4A9
      Related
      ENSGACP00000012432.2, ENSGACT00000012456.2
      Conserved Domains (1) summary
      smart00389
      Location:219 → 272
      HOX; Homeodomain
    Nucleotide Protein Strain
    Heading Accession and Version

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