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    PAX4 paired box 4 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100402138, updated on 9-Jan-2026
    Gene symbol
    PAX4
    Gene description
    paired box 4
    See related
    Ensembl:ENSCJAG00000017652
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    all
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    Try the new Transcripts and proteins table
    See PAX4 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2025_12 current calJac240_pri (GCF_049354715.1) 11 NC_133512.1 (119358468..119363642)
    RS_2023_03 previous assembly mCalJa1.2.pat.X (GCF_011100555.1) 8 NC_071449.1 (116630568..116635791)

    Chromosome 11 - NC_133512.1Genomic Context describing neighboring genes Neighboring gene staphylococcal nuclease and tudor domain containing 1 Neighboring gene CD2 antigen cytoplasmic tail-binding protein 2 pseudogene Neighboring gene phosphoglycerate mutase 1-like Neighboring gene uncharacterized LOC128928470 Neighboring gene fascin actin-bundling protein 3 Neighboring gene ARF GTPase 5

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    paired box protein Pax-4

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    RefSeqs of Annotated Genomes: GCF_049354715.1-RS_2025_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference calJac240_pri Primary Assembly

    Genomic

    1. NC_133512.1 Reference calJac240_pri Primary Assembly

      Range
      119358468..119363642
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017975672.5 → XP_017831161.2  paired box protein Pax-4

      UniProtKB/TrEMBL
      B0VXF5
      Conserved Domains (2) summary
      smart00351
      Location:5 → 129
      PAX; Paired Box domain
      pfam00046
      Location:174 → 227
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

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