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    klf1 KLF transcription factor 1 [ Anolis carolinensis (green anole) ]

    Gene ID: 100566147, updated on 8-Mar-2024

    Summary

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    Gene symbol
    klf1
    Gene description
    KLF transcription factor 1
    See related
    Ensembl:ENSACAG00000008367
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anolis carolinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
    Orthologs
    human mouse all
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    Genomic context

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    See klf1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 2 NC_085842.1 (195099121..195106800)
    102 previous assembly AnoCar2.0 (GCF_000090745.1) 2 NC_014777.1 (27730506..27738481)

    Chromosome 2 - NC_085842.1Genomic Context describing neighboring genes Neighboring gene synaptonemal complex central element protein 2 Neighboring gene glutaryl-CoA dehydrogenase Neighboring gene trichohyalin Neighboring gene zinc finger GATA like protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Krueppel-like factor 1
    Names
    Kruppel like factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAnoCar3.1.pri

    Genomic

    1. NC_085842.1 Reference rAnoCar3.1.pri

      Range
      195099121..195106800
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008103084.3 → XP_008101291.1  Krueppel-like factor 1 isoform X1

      See identical proteins and their annotated locations for XP_008101291.1

      Conserved Domains (3) summary
      COG5048
      Location:295 → 363
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:301 → 320
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:342 → 367
      zf-H2C2_2; Zinc-finger double domain

    2. XM_003216390.4 → XP_003216438.1  Krueppel-like factor 1 isoform X2

      UniProtKB/TrEMBL
      G1KHN6
      Related
      ENSACAP00000008186.4
      Conserved Domains (3) summary
      COG5048
      Location:292 → 360
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:298 → 317
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:339 → 364
      zf-H2C2_2; Zinc-finger double domain

    3. XM_008103085.3 → XP_008101292.1  Krueppel-like factor 1 isoform X1

      See identical proteins and their annotated locations for XP_008101292.1

      Conserved Domains (3) summary
      COG5048
      Location:295 → 363
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:301 → 320
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:342 → 367
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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