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    COR413-PM1 cold regulated 413 plasma membrane 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816092, updated on 11-Oct-2018

    Summary

    Gene symbol
    COR413-PM1
    Gene description
    cold regulated 413 plasma membrane 1
    Primary source
    Araport:AT2G15970
    Locus tag
    AT2G15970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA COLD-REGULATED413 PLASMA MEMBRANE 1; ATCOR413-PM1; ATCYP19; COLD ACCLIMATION PROTEIN WCOR413-LIKE PROTEIN ALPHA FORM; cold regulated 413 plasma membrane 1; CYCLOPHILLIN 19; F19G14.3; F19G14_3; FL3-5A3; WCOR413; WCOR413-LIKE
    Summary
    encodes an alpha form of a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment.

    Genomic context

    See COR413-PM1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (6949851..6951192)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene tRNA Neighboring gene stress-induced protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene hypothetical protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001202604.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    cellular response to water deprivation IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    cold acclimation IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    response to abscisic acid IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrion ISM
    Inferred from Sequence Model
    more info
     
    plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    vacuole IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    cold regulated 413 plasma membrane 1
    NP_001189533.1
    • cold regulated 413 plasma membrane 1 (COR413-PM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, cellular response to water deprivation, response to abscisic acid stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: Cold acclimation protein WCOR413 family (TAIR:AT4G37220.1).
    NP_179196.1
    • cold regulated 413 plasma membrane 1 (COR413-PM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, cellular response to water deprivation, response to abscisic acid stimulus; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: Cold acclimation protein WCOR413 family (TAIR:AT4G37220.1); Has 153 Blast hits to 150 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      6949851..6951192
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127156.4NP_179196.1  cold regulated 413 plasma membrane 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179196.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XIM7
      UniProtKB/TrEMBL
      A0A178VY40
      Conserved Domains (1) summary
      pfam05562
      Location:15187
      WCOR413; Cold acclimation protein WCOR413
    2. NM_001202604.1NP_001189533.1  cold regulated 413 plasma membrane 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189533.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IJE6
      Conserved Domains (1) summary
      pfam05562
      Location:15154
      WCOR413; Cold acclimation protein WCOR413
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