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    Ankrd50 ankyrin repeat domain 50 [ Mus musculus (house mouse) ]

    Gene ID: 99696, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ankrd50provided by MGI
    Official Full Name
    ankyrin repeat domain 50provided by MGI
    Primary source
    MGI:MGI:2139777
    See related
    Ensembl:ENSMUSG00000044864
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI662170; mKIAA1223; mKIAA3019; E430012K20Rik
    Expression
    Ubiquitous expression in lung adult (RPKM 12.5), thymus adult (RPKM 11.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ankrd50 in Genome Data Viewer
    Location:
    3; 3 B
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (38449261..38484860, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (38348183..38383738, complement)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 42213 Neighboring gene predicted gene, 36823 Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 22 pseudogene Neighboring gene ferritin light chain 1 pseudogene Neighboring gene predicted gene, 29879

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA1223

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    ankyrin repeat domain-containing protein 50
    Names
    ankrin repeat domain 50

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001167883.1NP_001161355.1  ankyrin repeat domain-containing protein 50

      Status: VALIDATED

      Source sequence(s)
      AC127284
      Consensus CDS
      CCDS50897.1
      UniProtKB/TrEMBL
      D3Z643
      Related
      ENSMUSP00000113349.1, ENSMUST00000120875.7
      Conserved Domains (1) summary
      pfam13191
      Location:22195
      AAA_16; AAA ATPase domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

      Range
      38449261..38484860 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006535582.3XP_006535645.1  ankyrin repeat domain-containing protein 50 isoform X1

      See identical proteins and their annotated locations for XP_006535645.1

      Related
      ENSMUSP00000122842.1, ENSMUST00000156038.1
      Conserved Domains (7) summary
      cd00204
      Location:9741097
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:9831075
      Ank_2; Ankyrin repeats (3 copies)
      pfam13191
      Location:22195
      AAA_16; AAA ATPase domain
      pfam13637
      Location:946999
      Ank_4; Ankyrin repeats (many copies)
      pfam13857
      Location:531585
      Ank_5; Ankyrin repeats (many copies)
      pfam16592
      Location:221352
      Cas9_REC; REC lobe of CRISPR-associated endonuclease Cas9
      sd00045
      Location:676707
      ANK; ANK repeat [structural motif]
    2. XM_011249725.2XP_011248027.1  ankyrin repeat domain-containing protein 50 isoform X1

      See identical proteins and their annotated locations for XP_011248027.1

      Conserved Domains (7) summary
      cd00204
      Location:9741097
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:9831075
      Ank_2; Ankyrin repeats (3 copies)
      pfam13191
      Location:22195
      AAA_16; AAA ATPase domain
      pfam13637
      Location:946999
      Ank_4; Ankyrin repeats (many copies)
      pfam13857
      Location:531585
      Ank_5; Ankyrin repeats (many copies)
      pfam16592
      Location:221352
      Cas9_REC; REC lobe of CRISPR-associated endonuclease Cas9
      sd00045
      Location:676707
      ANK; ANK repeat [structural motif]

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001033198.2: Suppressed sequence

      Description
      NM_001033198.2: This RefSeq was temporarily suppressed because the CDS was partial.
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