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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001291468.2 → NP_001278397.1 C-C motif chemokine 4-like isoform 1 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (CCL4L2) encodes isoform 1.
- Source sequence(s)
-
AY766450
- Consensus CDS
-
CCDS32627.2
- UniProtKB/TrEMBL
-
B7ZW36
- Related
- ENSP00000479354.1, ENST00000620576.5
- Conserved Domains (1) summary
-
- smart00199
Location:31 → 84
- SCY; Intercrine alpha family (small cytokine C-X-C) (chemokine CXC)
-
NM_001291469.2 → NP_001278398.1 C-C motif chemokine 4-like isoform 2 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (CCL4L2b1) uses an alternate splice site in the 3' terminal exon, and it thus contains an early termination codon and differs in its 3' UTR, compared to variant CCL4L2. The encoded isoform (2) is shorter at the C-terminus, compared to isoform 1. Both variants CCL4L2b1 and CCL4L2b2 encode isoform 2.
- Source sequence(s)
-
AY766451
- Consensus CDS
-
CCDS76999.1
- UniProtKB/Swiss-Prot
-
Q8NHW4
- Related
- ENSP00000481969.1, ENST00000620732.4
- Conserved Domains (1) summary
-
- smart00199
Location:31 → 64
- SCY; Intercrine alpha family (small cytokine C-X-C) (chemokine CXC)
-
NM_001291470.2 → NP_001278399.1 C-C motif chemokine 4-like isoform 2 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (CCL4L2b2) fails to splice out the 3'-most intron, and it thus contains an early termination codon and differs in its 3' UTR, compared to variant CCL4L2. The encoded isoform (2) is shorter at the C-terminus, compared to isoform 1. Both variants CCL4L2b1 and CCL4L2b2 encode isoform 2.
- Source sequence(s)
-
AY766452
- Consensus CDS
-
CCDS77004.1
- UniProtKB/Swiss-Prot
-
Q8NHW4
- Related
- ENSP00000480089.1, ENST00000617416.4
- Conserved Domains (1) summary
-
- smart00199
Location:31 → 64
- SCY; Intercrine alpha family (small cytokine C-X-C) (chemokine CXC)
-
NM_001291471.2 → NP_001278400.1 C-C motif chemokine 4-like isoform 3 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (CCL4L2c) uses an alternate splice site in the 3' terminal exon, and it thus differs in the 3' coding region and 3' UTR, compared to variant CCL4L2. The encoded isoform (3) has a distinct C-terminus and is longer than isoform 1.
- Source sequence(s)
-
AY766453
- Consensus CDS
-
CCDS77001.1
- UniProtKB/TrEMBL
-
A0A0J9YWH4
- Related
- ENSP00000479774.1, ENST00000620098.4
- Conserved Domains (1) summary
-
- smart00199
Location:31 → 64
- SCY; Intercrine alpha family (small cytokine C-X-C) (chemokine CXC)
-
NM_001291472.2 → NP_001278401.1 C-C motif chemokine 4-like isoform 4 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (CCL4L2d) uses an alternate splice site in the 3' terminal exon, and it thus differs in the 3' coding region and 3' UTR, compared to variant CCL4L2. The encoded isoform (4) has a distinct C-terminus and is longer than isoform 1.
- Source sequence(s)
-
AY766454
- Consensus CDS
-
CCDS77002.1
- UniProtKB/TrEMBL
-
A0A0J9YWH4
- Related
- ENSP00000483206.1, ENST00000615418.4
- Conserved Domains (1) summary
-
- smart00199
Location:31 → 81
- SCY; Intercrine alpha family (small cytokine C-X-C) (chemokine CXC)
-
NM_001291473.2 → NP_001278402.1 C-C motif chemokine 4-like isoform 5 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (CCL4L2e) uses an alternate splice site in the 3' terminal exon, and it thus differs in the 3' coding region and 3' UTR, compared to variant CCL4L2. The encoded isoform (5) has a distinct C-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AY766455
- Consensus CDS
-
CCDS77003.1
- UniProtKB/TrEMBL
-
A0A0J9YWH4
- Related
- ENSP00000484498.1, ENST00000610565.4
- Conserved Domains (1) summary
-
- smart00199
Location:31 → 65
- SCY; Intercrine alpha family (small cytokine C-X-C) (chemokine CXC)
-
NM_001291474.2 → NP_001278403.1 C-C motif chemokine 4-like isoform 6 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (CCL4L2bdelta2) lacks an alternate internal exon and uses an alternate splice site in the 3' terminal exon, and it thus differs in the 3' coding region and 3' UTR, compared to variant CCL4L2. The encoded isoform (6) has a distinct C-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AY766457
- Consensus CDS
-
CCDS77005.1
- Related
- ENSP00000484455.1, ENST00000613173.4
-
NM_001291475.2 → NP_001278404.1 C-C motif chemokine 4-like isoform 7 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (CCL4L2f) uses an alternate splice site in the 3' terminal exon, and it thus differs in the 3' coding region and 3' UTR, compared to variant CCL4L2. The encoded isoform (7) has a distinct C-terminus and is longer than isoform 1.
- Source sequence(s)
-
AY766458
- Consensus CDS
-
CCDS77000.1
- Related
- ENSP00000483330.1, ENST00000617405.5
- Conserved Domains (1) summary
-
- smart00199
Location:31 → 72
- SCY; Intercrine alpha family (small cytokine C-X-C) (chemokine CXC)
RNA
-
NR_111970.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (CCL4L2delta2) lacks an alternate internal exon, compared to variant CCL4L2. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
- Source sequence(s)
-
AY766456
- Related
-
ENST00000620055.4
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000017.11 Reference GRCh38.p14 Primary Assembly
- Range
-
36211063..36212873
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054328432.1 → XP_054184407.1 C-C motif chemokine 4-like isoform X1
- UniProtKB/Swiss-Prot
- B2RUZ3, B7ZMA8, Q50EM1, Q50EM2, Q50EM3, Q50EM4, Q50EM5, Q50EM6, Q50EM7, Q50EM8, Q569J2, Q6NSB0, Q8NHW4
- UniProtKB/TrEMBL
-
B7ZW36
- Related
- ENSP00000483609.1, ENST00000620250.1
-
XM_054328433.1 → XP_054184408.1 C-C motif chemokine 4-like isoform X2
- UniProtKB/TrEMBL
-
Q6JSE0
Reference GRCh38.p14 ALT_REF_LOCI_1
Genomic
-
NT_187614.1 Reference GRCh38.p14 ALT_REF_LOCI_1
- Range
-
445967..447777
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054329390.1 → XP_054185365.1 C-C motif chemokine 4-like isoform X1
- UniProtKB/Swiss-Prot
- B2RUZ3, B7ZMA8, Q50EM1, Q50EM2, Q50EM3, Q50EM4, Q50EM5, Q50EM6, Q50EM7, Q50EM8, Q569J2, Q6NSB0, Q8NHW4
- UniProtKB/TrEMBL
-
B7ZW36
-
XM_054329391.1 → XP_054185366.1 C-C motif chemokine 4-like isoform X2
- UniProtKB/TrEMBL
-
Q6JSE0
Reference GRCh38.p14 ALT_REF_LOCI_2
Genomic
-
NT_187661.1 Reference GRCh38.p14 ALT_REF_LOCI_2
- Range
-
165200..167010
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054330085.1 → XP_054186060.1 C-C motif chemokine 4-like isoform X1
- UniProtKB/Swiss-Prot
- B2RUZ3, B7ZMA8, Q50EM1, Q50EM2, Q50EM3, Q50EM4, Q50EM5, Q50EM6, Q50EM7, Q50EM8, Q569J2, Q6NSB0, Q8NHW4
- UniProtKB/TrEMBL
-
B7ZW36
-
XM_054330086.1 → XP_054186061.1 C-C motif chemokine 4-like isoform X2
- UniProtKB/TrEMBL
-
Q6JSE0
Alternate T2T-CHM13v2.0
Genomic
-
NC_060941.1 Alternate T2T-CHM13v2.0
- Range
-
37158945..37160755
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054317888.1 → XP_054173863.1 C-C motif chemokine 4-like isoform X1
- UniProtKB/Swiss-Prot
- B2RUZ3, B7ZMA8, Q50EM1, Q50EM2, Q50EM3, Q50EM4, Q50EM5, Q50EM6, Q50EM7, Q50EM8, Q569J2, Q6NSB0, Q8NHW4
- UniProtKB/TrEMBL
-
B7ZW36
-
XM_054317889.1 → XP_054173864.1 C-C motif chemokine 4-like isoform X2
- UniProtKB/TrEMBL
-
Q6JSE0
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001001435.2: Suppressed sequence
- Description
- NM_001001435.2: This RefSeq was permanently suppressed because this gene's genomic location lacks the 3' terminal exon splice site, and it cannot produce this transcript variant.