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    Clec2d C-type lectin domain family 2, member d [ Mus musculus (house mouse) ]

    Gene ID: 93694, updated on 4-Sep-2018

    Summary

    Official Symbol
    Clec2dprovided by MGI
    Official Full Name
    C-type lectin domain family 2, member dprovided by MGI
    Primary source
    MGI:MGI:2135589
    See related
    Ensembl:ENSMUSG00000030157 Vega:OTTMUSG00000029144
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Clrb; Ocil; Clr-b
    Expression
    Broad expression in lung adult (RPKM 34.9), large intestine adult (RPKM 31.4) and 17 other tissues See more

    Genomic context

    See Clec2d in Genome Data Viewer
    Location:
    6; 6 F3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (129180615..129186535)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (129130640..129136552)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene C-type lectin domain family 2, member e Neighboring gene killer cell lectin-like receptor subfamily B member 1, pseudogene 1 Neighboring gene predicted gene, 38906 Neighboring gene RIKEN cDNA 2310001H17 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    General gene information

    Markers

    Clone Names

    • MGC123478

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    carbohydrate binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    natural killer cell lectin-like receptor binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    transmembrane signaling receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Component Evidence Code Pubs
    external side of plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of plasma membrane TAS
    Traceable Author Statement
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    C-type lectin domain family 2 member D
    Names
    C-type lectin-domain family 2 member D
    C-type lectin-related protein B
    lectin-like transmembrane protein
    osteoclast inhibitory lectin

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_053109.3NP_444339.1  C-type lectin domain family 2 member D

      Status: VALIDATED

      Source sequence(s)
      AW987086, AY320031
      Consensus CDS
      CCDS20581.1
      UniProtKB/Swiss-Prot
      Q91V08
      UniProtKB/TrEMBL
      F5BFH0
      Related
      ENSMUSP00000032260.5, OTTMUSP00000037157, ENSMUST00000032260.5, OTTMUST00000072287
      Conserved Domains (3) summary
      cd03593
      Location:80192
      CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
      PHA02867
      Location:39196
      PHA02867; C-type lectin protein; Provisional
      pfam05473
      Location:3144
      Herpes_UL45; UL45 protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      129180615..129186535
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006506805.3XP_006506868.1  C-type lectin domain family 2 member D isoform X1

      Conserved Domains (1) summary
      cd03593
      Location:31143
      CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
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