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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001301073.2 → NP_001288002.1 CCR4-NOT transcription complex subunit 8 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and encode the same isoform (1), compared to variant 1.
- Source sequence(s)
-
AK025358, AL122045
- Consensus CDS
-
CCDS4329.1
- UniProtKB/Swiss-Prot
- B0AZS3, B2RAR8, B7Z8R1, D3DQI8, O95709, Q7Z521, Q9H6Y1, Q9UFF9
- Related
- ENSP00000285896.6, ENST00000285896.11
- Conserved Domains (1) summary
-
- cl23804
Location:1 → 263
- CAF1; CAF1 family ribonuclease
-
NM_001301074.2 → NP_001288003.1 CCR4-NOT transcription complex subunit 8 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR and lacks an in-frame coding exon, compared to variant 1. The resulting isoform (2) lacks an internal segment, compared to isoform 1.
- Source sequence(s)
-
AK303775, AK314317, AL122045
- Consensus CDS
-
CCDS75361.1
- UniProtKB/TrEMBL
-
E5RIL2
- Related
- ENSP00000430833.1, ENST00000519404.5
- Conserved Domains (1) summary
-
- cl23804
Location:1 → 209
- CAF1; CAF1 family ribonuclease
-
NM_001301075.2 → NP_001288004.1 CCR4-NOT transcription complex subunit 8 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an exon in the 5' region, which results in translation initiation at a downstream in-frame AUG, compared to variant 1. The resulting isoform (3) has a shorter N-terminus, compared to isoform 1. Variants 4, 5, 6, 7 and 8 encode the same isoform 3.
- Source sequence(s)
-
AK297381, AK314317, AL122045
- Consensus CDS
-
CCDS78074.1
- UniProtKB/Swiss-Prot
-
Q9UFF9
- Conserved Domains (1) summary
-
- cl23804
Location:1 → 157
- CAF1; CAF1 family ribonuclease
-
NM_001301077.2 → NP_001288006.1 CCR4-NOT transcription complex subunit 8 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) has multiple differences in the 5' region, one of which results in translation initiation at a downstream in-frame AUG, compared to variant 1. The resulting isoform (3) has a shorter N-terminus, compared to isoform 1. Variants 4, 5, 6, 7 and 8 encode the same isoform 3.
- Source sequence(s)
-
AK309359, AL122045, DC387160
- Consensus CDS
-
CCDS78074.1
- UniProtKB/Swiss-Prot
-
Q9UFF9
- Related
- ENSP00000429882.1, ENST00000521583.5
- Conserved Domains (1) summary
-
- cl23804
Location:1 → 157
- CAF1; CAF1 family ribonuclease
-
NM_001301080.2 → NP_001288009.1 CCR4-NOT transcription complex subunit 8 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) has an alternate splice site and lacks two internal exons in the 5' region, which results in translation initiation at a downstream in-frame AUG, compared to variant 1. The resulting isoform (3) has a shorter N-terminus, compared to isoform 1. Variants 4, 5, 6, 7 and 8 encode the same isoform 3.
- Source sequence(s)
-
AK315864, AL122045
- Consensus CDS
-
CCDS78074.1
- UniProtKB/Swiss-Prot
-
Q9UFF9
- Related
- ENSP00000428305.1, ENST00000520671.5
- Conserved Domains (1) summary
-
- cl23804
Location:1 → 157
- CAF1; CAF1 family ribonuclease
-
NM_001301082.1 → NP_001288011.1 CCR4-NOT transcription complex subunit 8 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) has multiple differences in the 5' region, one of which results in translation initiation at a downstream in-frame AUG, compared to variant 1. The resulting isoform (3) has a shorter N-terminus, compared to isoform 1. Variants 4, 5, 6, 7 and 8 encode the same isoform 3.
- Source sequence(s)
-
AK316221, AL122045
- Consensus CDS
-
CCDS78074.1
- UniProtKB/Swiss-Prot
-
Q9UFF9
- Related
- ENSP00000431034.1, ENST00000521450.5
- Conserved Domains (1) summary
-
- cl23804
Location:1 → 157
- CAF1; CAF1 family ribonuclease
-
NM_001301083.1 → NP_001288012.1 CCR4-NOT transcription complex subunit 8 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (8) has an alternate 5' UTR exon and also lacks two consecutive internal exons, which result in translation initiation at a downstream in-frame AUG, compared to variant 1. The resulting isoform (3) has a shorter N-terminus, compared to isoform 1. Variants 4, 5, 6, 7 and 8 encode the same isoform 3.
- Source sequence(s)
-
AK316269, AL122045, AL520837
- Consensus CDS
-
CCDS78074.1
- UniProtKB/Swiss-Prot
-
Q9UFF9
- Related
- ENSP00000428565.1, ENST00000523698.5
- Conserved Domains (1) summary
-
- cl23804
Location:1 → 157
- CAF1; CAF1 family ribonuclease
-
NM_001301086.2 → NP_001288015.1 CCR4-NOT transcription complex subunit 8 isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (9) has an alternate splice site and lacks two internal exons in the 5' region, which result in translation initiation at a downstream in-frame AUG, compared to variant 1. The resulting isoform (4) has a shorter N-terminus, compared to variant 1.
- Source sequence(s)
-
AK315864, AK316055, AL122045
- Consensus CDS
-
CCDS78075.1
- UniProtKB/TrEMBL
-
B7Z9U0
- Related
- ENSP00000429576.1, ENST00000524105.5
- Conserved Domains (1) summary
-
- cl23804
Location:1 → 99
- CAF1; CAF1 family ribonuclease
-
NM_004779.6 → NP_004770.4 CCR4-NOT transcription complex subunit 8 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1). Variants 1 and 2 encode the same isoform 1.
- Source sequence(s)
-
AK314317, AL122045
- Consensus CDS
-
CCDS4329.1
- UniProtKB/Swiss-Prot
- B0AZS3, B2RAR8, B7Z8R1, D3DQI8, O95709, Q7Z521, Q9H6Y1, Q9UFF9
- Related
- ENSP00000384747.2, ENST00000403027.6
- Conserved Domains (1) summary
-
- cl23804
Location:1 → 263
- CAF1; CAF1 family ribonuclease
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000005.10 Reference GRCh38.p14 Primary Assembly
- Range
-
154858249..154876792
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047417891.1 → XP_047273847.1 CCR4-NOT transcription complex subunit 8 isoform X3
-
XM_047417890.1 → XP_047273846.1 CCR4-NOT transcription complex subunit 8 isoform X3
-
XM_047417892.1 → XP_047273848.1 CCR4-NOT transcription complex subunit 8 isoform X4
- UniProtKB/TrEMBL
-
B7Z9U0
-
XM_047417881.1 → XP_047273837.1 CCR4-NOT transcription complex subunit 8 isoform X1
- UniProtKB/Swiss-Prot
- B0AZS3, B2RAR8, B7Z8R1, D3DQI8, O95709, Q7Z521, Q9H6Y1, Q9UFF9
-
XM_047417882.1 → XP_047273838.1 CCR4-NOT transcription complex subunit 8 isoform X1
- UniProtKB/Swiss-Prot
- B0AZS3, B2RAR8, B7Z8R1, D3DQI8, O95709, Q7Z521, Q9H6Y1, Q9UFF9
-
XM_047417880.1 → XP_047273836.1 CCR4-NOT transcription complex subunit 8 isoform X1
- UniProtKB/Swiss-Prot
- B0AZS3, B2RAR8, B7Z8R1, D3DQI8, O95709, Q7Z521, Q9H6Y1, Q9UFF9
-
XM_047417885.1 → XP_047273841.1 CCR4-NOT transcription complex subunit 8 isoform X2
- UniProtKB/TrEMBL
-
E5RIL2
-
XM_017010051.2 → XP_016865540.1 CCR4-NOT transcription complex subunit 8 isoform X1
- UniProtKB/Swiss-Prot
- B0AZS3, B2RAR8, B7Z8R1, D3DQI8, O95709, Q7Z521, Q9H6Y1, Q9UFF9
- Conserved Domains (1) summary
-
- cl23804
Location:1 → 263
- CAF1; CAF1 family ribonuclease
-
XM_017010055.3 → XP_016865544.1 CCR4-NOT transcription complex subunit 8 isoform X2
- UniProtKB/TrEMBL
-
E5RIL2
- Related
- ENSP00000429394.1, ENST00000518775.5
- Conserved Domains (1) summary
-
- cl23804
Location:1 → 209
- CAF1; CAF1 family ribonuclease
-
XM_047417884.1 → XP_047273840.1 CCR4-NOT transcription complex subunit 8 isoform X2
- UniProtKB/TrEMBL
-
E5RIL2
-
XM_047417889.1 → XP_047273845.1 CCR4-NOT transcription complex subunit 8 isoform X3
-
XM_017010050.2 → XP_016865539.1 CCR4-NOT transcription complex subunit 8 isoform X1
- UniProtKB/Swiss-Prot
- B0AZS3, B2RAR8, B7Z8R1, D3DQI8, O95709, Q7Z521, Q9H6Y1, Q9UFF9
- Conserved Domains (1) summary
-
- cl23804
Location:1 → 263
- CAF1; CAF1 family ribonuclease
-
XM_017010054.3 → XP_016865543.1 CCR4-NOT transcription complex subunit 8 isoform X2
- UniProtKB/TrEMBL
-
E5RIL2
- Conserved Domains (1) summary
-
- cl23804
Location:1 → 209
- CAF1; CAF1 family ribonuclease
-
XM_047417888.1 → XP_047273844.1 CCR4-NOT transcription complex subunit 8 isoform X3
-
XM_047417883.1 → XP_047273839.1 CCR4-NOT transcription complex subunit 8 isoform X1
- UniProtKB/Swiss-Prot
- B0AZS3, B2RAR8, B7Z8R1, D3DQI8, O95709, Q7Z521, Q9H6Y1, Q9UFF9
-
XM_047417893.1 → XP_047273849.1 CCR4-NOT transcription complex subunit 8 isoform X5
- UniProtKB/TrEMBL
- A0A088AWM7, A0A0E3D6L6, A0A0U1RVH4, E5RHL9, E5RJC5, E5RK92
- Related
- ENSP00000428576.1, ENST00000522644.5
-
XM_017010056.2 → XP_016865545.1 CCR4-NOT transcription complex subunit 8 isoform X2
- UniProtKB/TrEMBL
-
E5RIL2
- Conserved Domains (1) summary
-
- cl23804
Location:1 → 209
- CAF1; CAF1 family ribonuclease
-
XM_047417886.1 → XP_047273842.1 CCR4-NOT transcription complex subunit 8 isoform X2
- UniProtKB/TrEMBL
-
E5RIL2
-
XM_047417887.1 → XP_047273843.1 CCR4-NOT transcription complex subunit 8 isoform X2
- UniProtKB/TrEMBL
-
E5RIL2
Alternate T2T-CHM13v2.0
Genomic
-
NC_060929.1 Alternate T2T-CHM13v2.0
- Range
-
155392211..155410754
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054353819.1 → XP_054209794.1 CCR4-NOT transcription complex subunit 8 isoform X3
-
XM_054353806.1 → XP_054209781.1 CCR4-NOT transcription complex subunit 8 isoform X1
- UniProtKB/Swiss-Prot
- B0AZS3, B2RAR8, B7Z8R1, D3DQI8, O95709, Q7Z521, Q9H6Y1, Q9UFF9
-
XM_054353807.1 → XP_054209782.1 CCR4-NOT transcription complex subunit 8 isoform X1
- UniProtKB/Swiss-Prot
- B0AZS3, B2RAR8, B7Z8R1, D3DQI8, O95709, Q7Z521, Q9H6Y1, Q9UFF9
-
XM_054353818.1 → XP_054209793.1 CCR4-NOT transcription complex subunit 8 isoform X3
-
XM_054353820.1 → XP_054209795.1 CCR4-NOT transcription complex subunit 8 isoform X4
- UniProtKB/TrEMBL
-
B7Z9U0
-
XM_054353808.1 → XP_054209783.1 CCR4-NOT transcription complex subunit 8 isoform X1
- UniProtKB/Swiss-Prot
- B0AZS3, B2RAR8, B7Z8R1, D3DQI8, O95709, Q7Z521, Q9H6Y1, Q9UFF9
-
XM_054353804.1 → XP_054209779.1 CCR4-NOT transcription complex subunit 8 isoform X1
- UniProtKB/Swiss-Prot
- B0AZS3, B2RAR8, B7Z8R1, D3DQI8, O95709, Q7Z521, Q9H6Y1, Q9UFF9
-
XM_054353810.1 → XP_054209785.1 CCR4-NOT transcription complex subunit 8 isoform X2
- UniProtKB/TrEMBL
-
E5RIL2
-
XM_054353811.1 → XP_054209786.1 CCR4-NOT transcription complex subunit 8 isoform X2
- UniProtKB/TrEMBL
-
E5RIL2
-
XM_054353803.1 → XP_054209778.1 CCR4-NOT transcription complex subunit 8 isoform X1
- UniProtKB/Swiss-Prot
- B0AZS3, B2RAR8, B7Z8R1, D3DQI8, O95709, Q7Z521, Q9H6Y1, Q9UFF9
-
XM_054353809.1 → XP_054209784.1 CCR4-NOT transcription complex subunit 8 isoform X2
- UniProtKB/TrEMBL
-
E5RIL2
-
XM_054353817.1 → XP_054209792.1 CCR4-NOT transcription complex subunit 8 isoform X3
-
XM_054353816.1 → XP_054209791.1 CCR4-NOT transcription complex subunit 8 isoform X3
-
XM_054353813.1 → XP_054209788.1 CCR4-NOT transcription complex subunit 8 isoform X2
- UniProtKB/TrEMBL
-
E5RIL2
-
XM_054353805.1 → XP_054209780.1 CCR4-NOT transcription complex subunit 8 isoform X1
- UniProtKB/Swiss-Prot
- B0AZS3, B2RAR8, B7Z8R1, D3DQI8, O95709, Q7Z521, Q9H6Y1, Q9UFF9
-
XM_054353821.1 → XP_054209796.1 CCR4-NOT transcription complex subunit 8 isoform X5
- UniProtKB/TrEMBL
- A0A088AWM7, A0A0E3D6L6, A0A0U1RVH4, E5RHL9, E5RJC5, E5RK92
-
XM_054353814.1 → XP_054209789.1 CCR4-NOT transcription complex subunit 8 isoform X2
- UniProtKB/TrEMBL
-
E5RIL2
-
XM_054353812.1 → XP_054209787.1 CCR4-NOT transcription complex subunit 8 isoform X2
- UniProtKB/TrEMBL
-
E5RIL2
-
XM_054353815.1 → XP_054209790.1 CCR4-NOT transcription complex subunit 8 isoform X2
- UniProtKB/TrEMBL
-
E5RIL2