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    Snurf SNRPN upstream reading frame [ Mus musculus (house mouse) ]

    Gene ID: 84704, updated on 12-Aug-2019

    Summary

    Official Symbol
    Snurfprovided by MGI
    Official Full Name
    SNRPN upstream reading frameprovided by MGI
    Primary source
    MGI:MGI:1891236
    See related
    Ensembl:ENSMUSG00000102627
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2410045I01Rik
    Summary
    This gene is located within the mouse orthologous Prader-Willi Syndrome critical region and is imprinted and expressed from the paternal allele. This transcipt is thought to be bicistronic and can encode the small nuclear ribonucleoprotein polypeptide N (Snrpn) from a downstream open reading frame. The small protein represented by this gene is encoded by an evolutionarily-conserved upstream open reading frame and is localized to the nucleus. [provided by RefSeq, Mar 2017]
    Expression
    Biased expression in cerebellum adult (RPKM 239.9), cortex adult (RPKM 239.6) and 8 other tissues See more
    Orthologs

    Genomic context

    See Snurf in Genome Data Viewer
    Location:
    7; 7 B5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    108 current GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (59982495..60005199, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (67127388..67150042, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA host gene 14 Neighboring gene small nucleolar RNA SNORD107 Neighboring gene small nucleolar RNA, C/D box 64 Neighboring gene small nuclear ribonucleoprotein N Neighboring gene pyruvate dehydrogenase complex, component X pseudogene Neighboring gene 1110014K08Rik pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Clone Names

    • MGC18604, MGC30325

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ATPase binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    nuclear speck IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nuclear speck ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    SNRPN upstream reading frame protein
    Names
    small nuclear ribonucleoprotein N

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_033174.4NP_149409.1  SNRPN upstream reading frame protein

      See identical proteins and their annotated locations for NP_149409.1

      Status: VALIDATED

      Source sequence(s)
      AC167813, AC172750, BC132082, BY648312, CF751578
      Consensus CDS
      CCDS57553.1
      UniProtKB/Swiss-Prot
      Q9WU12
      Related
      ENSMUSP00000141531.1, ENSMUST00000194059.1
      Conserved Domains (1) summary
      pfam07192
      Location:271
      SNURF; SNURF/RPN4 protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p6 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p6 C57BL/6J

      Range
      59982495..60005199 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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