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    STX7 syntaxin 7 [ Homo sapiens (human) ]

    Gene ID: 8417, updated on 17-Jun-2019

    Summary

    Official Symbol
    STX7provided by HGNC
    Official Full Name
    syntaxin 7provided by HGNC
    Primary source
    HGNC:HGNC:11442
    See related
    Ensembl:ENSG00000079950 MIM:603217
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    The protein encoded by this gene is a syntaxin family membrane receptor involved in vesicle transport. The encoded protein binds alpha-SNAP, an important regulator of transport vesicle fusion. Along with syntaxin 13, this protein plays a role in the ordered fusion of endosomes and lysosomes with the phagosome. [provided by RefSeq, May 2016]
    Expression
    Ubiquitous expression in lymph node (RPKM 31.8), spleen (RPKM 19.7) and 24 other tissues See more
    Orthologs

    Genomic context

    See STX7 in Genome Data Viewer
    Location:
    6q23.2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (132445867..132513472, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (132778663..132834337, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene 36 Neighboring gene monooxygenase DBH like 1 Neighboring gene ribosomal protein L21 pseudogene 66 Neighboring gene trace amine associated receptor 9 (gene/pseudogene)

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    HIV-1 interactions

    Protein interactions

    Protein Gene Interaction Pubs
    Pr55(Gag) gag Inhibition of endocytosis by siRNA-mediated depletion of EPS15, STX7, RAB7, and VAMP7 restores Gag/p24 expression in the presence of APOL1 PubMed
    capsid gag Inhibition of endocytosis by siRNA-mediated depletion of EPS15, STX7, RAB7, and VAMP7 restores Gag/p24 expression in the presence of APOL1 PubMed

    Go to the HIV-1, Human Interaction Database

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    SNAP receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    SNARE binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    SNARE binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    chloride channel inhibitor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    syntaxin binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    intracellular protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    organelle assembly IDA
    Inferred from Direct Assay
    more info
    PubMed 
    organelle localization IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of T cell mediated cytotoxicity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of receptor localization to synapse IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of protein localization to plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    vesicle docking IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    vesicle fusion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    SNARE complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    azurophil granule IDA
    Inferred from Direct Assay
    more info
    PubMed 
    early endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    early endosome membrane IEA
    Inferred from Electronic Annotation
    more info
     
    endocytic vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    endomembrane system IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    extracellular exosome HDA PubMed 
    immunological synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    late endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    lysosomal membrane HDA PubMed 
    lysosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    recycling endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    synaptic vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    tertiary granule IDA
    Inferred from Direct Assay
    more info
    PubMed 
    vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_050740.1 RefSeqGene

      Range
      5275..56999
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001326578.2NP_001313507.1  syntaxin-7 isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Variants 1, 2, and 3 all encode the same isoform (a).
      Source sequence(s)
      AL357034, AL589691
      Consensus CDS
      CCDS5153.1
      UniProtKB/Swiss-Prot
      O15400
      Conserved Domains (2) summary
      cd15875
      Location:168227
      SNARE_syntaxin7; SNARE motif of syntaxin 7
      pfam14523
      Location:18119
      Syntaxin_2; Syntaxin-like protein
    2. NM_001326579.1NP_001313508.1  syntaxin-7 isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2, and 3 all encode the same isoform (a).
      Source sequence(s)
      AL357034, AL589691
      Consensus CDS
      CCDS5153.1
      UniProtKB/Swiss-Prot
      O15400
      Conserved Domains (2) summary
      cd15875
      Location:168227
      SNARE_syntaxin7; SNARE motif of syntaxin 7
      pfam14523
      Location:18119
      Syntaxin_2; Syntaxin-like protein
    3. NM_001326580.2NP_001313509.1  syntaxin-7 isoform b

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR, 3' UTR, and 3' coding sequence compared to variant 1. The resulting isoform (b) has a shorter and distinct C-terminus compared to isoform a.
      Source sequence(s)
      AL357034, AL589691
      Consensus CDS
      CCDS87441.1
      UniProtKB/Swiss-Prot
      O15400
      Related
      ENSP00000356914.4, ENST00000367937.4
      Conserved Domains (2) summary
      cd00179
      Location:9148
      SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
      cd15875
      Location:168227
      SNARE_syntaxin7; SNARE motif of syntaxin 7
    4. NM_003569.3NP_003560.2  syntaxin-7 isoform a

      See identical proteins and their annotated locations for NP_003560.2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2, and 3 all encode the same isoform (a).
      Source sequence(s)
      AJ420529, AL357034, AW500305, BC011975, BF064142, DA242979, U77942
      Consensus CDS
      CCDS5153.1
      UniProtKB/Swiss-Prot
      O15400
      Related
      ENSP00000356918.1, ENST00000367941.7
      Conserved Domains (2) summary
      cd15875
      Location:168227
      SNARE_syntaxin7; SNARE motif of syntaxin 7
      pfam14523
      Location:18119
      Syntaxin_2; Syntaxin-like protein

    RNA

    1. NR_137169.1 RNA Sequence

      Status: REVIEWED

      Description
      Transcript Variant: This variant (5) differs in the 5' end and lacks an alternate exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AL357034, AL589691

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

      Range
      132445867..132513472 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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