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    PRR15L proline rich 15 like [ Homo sapiens (human) ]

    Gene ID: 79170, updated on 17-Jun-2019

    Summary

    Official Symbol
    PRR15Lprovided by HGNC
    Official Full Name
    proline rich 15 likeprovided by HGNC
    Primary source
    HGNC:HGNC:28149
    See related
    Ensembl:ENSG00000167183
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ATAD4
    Expression
    Biased expression in duodenum (RPKM 78.9), small intestine (RPKM 58.5) and 11 other tissues See more
    Orthologs

    Genomic context

    See PRR15L in Genome Data Viewer
    Location:
    17q21.32
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (47951967..47957905, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (46029333..46035252, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene SP2 antisense RNA 1 Neighboring gene Sp2 transcription factor Neighboring gene pyridoxamine 5'-phosphate oxidase Neighboring gene CDK5 regulatory subunit associated protein 3 Neighboring gene coatomer protein complex subunit zeta 2 Neighboring gene microRNA 10226

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    NHGRI GWAS Catalog

    Description
    Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32
    NHGRI GWA Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC11242

    General protein information

    Preferred Names
    proline-rich protein 15-like protein
    Names
    ATPase family, AAA domain containing 4
    testicular tissue protein Li 157

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_024320.4NP_077296.1  proline-rich protein 15-like protein

      See identical proteins and their annotated locations for NP_077296.1

      Status: VALIDATED

      Source sequence(s)
      AA707319, AA916635, AC018521, BM829856, BM831136
      Consensus CDS
      CCDS11523.1
      UniProtKB/Swiss-Prot
      Q9BU68
      UniProtKB/TrEMBL
      A0A140VJT1
      Related
      ENSP00000300557.2, ENST00000300557.3
      Conserved Domains (1) summary
      pfam15321
      Location:788
      ATAD4; ATPase family AAA domain containing 4

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

      Range
      47951967..47957905 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005257666.4XP_005257723.1  proline-rich protein 15-like protein isoform X1

      See identical proteins and their annotated locations for XP_005257723.1

      UniProtKB/Swiss-Prot
      Q9BU68
      UniProtKB/TrEMBL
      A0A140VJT1
      Conserved Domains (1) summary
      pfam15321
      Location:788
      ATAD4; ATPase family AAA domain containing 4
    2. XM_005257663.4XP_005257720.1  proline-rich protein 15-like protein isoform X1

      See identical proteins and their annotated locations for XP_005257720.1

      UniProtKB/Swiss-Prot
      Q9BU68
      UniProtKB/TrEMBL
      A0A140VJT1
      Conserved Domains (1) summary
      pfam15321
      Location:788
      ATAD4; ATPase family AAA domain containing 4
    3. XM_005257664.2XP_005257721.1  proline-rich protein 15-like protein isoform X1

      See identical proteins and their annotated locations for XP_005257721.1

      UniProtKB/Swiss-Prot
      Q9BU68
      UniProtKB/TrEMBL
      A0A140VJT1
      Conserved Domains (1) summary
      pfam15321
      Location:788
      ATAD4; ATPase family AAA domain containing 4
    4. XM_005257665.1XP_005257722.1  proline-rich protein 15-like protein isoform X1

      See identical proteins and their annotated locations for XP_005257722.1

      UniProtKB/Swiss-Prot
      Q9BU68
      UniProtKB/TrEMBL
      A0A140VJT1
      Conserved Domains (1) summary
      pfam15321
      Location:788
      ATAD4; ATPase family AAA domain containing 4
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