Format

Send to:

Choose Destination
    • Showing Current items.

    Ly6k lymphocyte antigen 6 complex, locus K [ Mus musculus (house mouse) ]

    Gene ID: 76486, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ly6kprovided by MGI
    Official Full Name
    lymphocyte antigen 6 complex, locus Kprovided by MGI
    Primary source
    MGI:MGI:1923736
    See related
    Ensembl:ENSMUSG00000044678
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mLy-6K; 2410015A16Rik; 3110035B01Rik
    Expression
    Biased expression in testis adult (RPKM 130.0), thymus adult (RPKM 15.7) and 1 other tissue See more
    Orthologs

    Genomic context

    See Ly6k in Genome Data Viewer
    Location:
    15; 15 D3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (74796874..74799968, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (74627304..74630398, complement)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene lymphocyte antigen 6 complex, locus G6G Neighboring gene predicted gene, 33174 Neighboring gene glycosylphosphatidylinositol anchored molecule like Neighboring gene glycosylphosphatidylinositol anchored molecule like 2 Neighboring gene cytochrome P450, family 11, subfamily b, polypeptide 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    binding of sperm to zona pellucida IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    flagellated sperm motility IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    acrosomal vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    anchored component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    cell surface IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    lymphocyte antigen 6K
    Names
    ly-6K

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029627.2NP_083903.1  lymphocyte antigen 6K precursor

      See identical proteins and their annotated locations for NP_083903.1

      Status: PROVISIONAL

      Source sequence(s)
      AK010485
      Consensus CDS
      CCDS27532.1
      UniProtKB/Swiss-Prot
      Q9CWP4
      Related
      ENSMUSP00000052599.5, ENSMUST00000060301.5
      Conserved Domains (1) summary
      cd00117
      Location:21109
      LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      74796874..74799968 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center