Format

Send to:

Choose Destination
    • Showing Current items.

    LOC728989 phosphodiesterase 4D interacting protein pseudogene [ Homo sapiens (human) ]

    Gene ID: 728989, updated on 17-Jun-2019

    Summary

    Gene symbol
    LOC728989
    Gene description
    phosphodiesterase 4D interacting protein pseudogene
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in heart (RPKM 14.2), lymph node (RPKM 2.5) and 14 other tissues See more

    Genomic context

    See LOC728989 in Genome Data Viewer
    Location:
    1q21.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (147019336..147043039, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (146490895..146514599, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene HYDIN axonemal central pair apparatus protein 2 (pseudogene) Neighboring gene RNA, 5S ribosomal pseudogene 536 Neighboring gene NBPF member 12 Neighboring gene profilin 1 pseudogene 8 Neighboring gene uncharacterized LOC105371231 Neighboring gene insulin like growth factor 2 mRNA binding protein 2 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Phenotypes

    NHGRI GWAS Catalog

    Description
    Common genetic variation and the control of HIV-1 in humans.
    NHGRI GWA Catalog

    General gene information

    Markers

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024442.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC244394

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

      Range
      147019336..147043039 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center