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    Bcas2 breast carcinoma amplified sequence 2 [ Mus musculus (house mouse) ]

    Gene ID: 68183, updated on 12-May-2019

    Summary

    Official Symbol
    Bcas2provided by MGI
    Official Full Name
    breast carcinoma amplified sequence 2provided by MGI
    Primary source
    MGI:MGI:1915433
    See related
    Ensembl:ENSMUSG00000005687
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C76366; C80030; AI132645; 6430539P16Rik
    Expression
    Ubiquitous expression in liver E14 (RPKM 58.9), liver E14.5 (RPKM 49.6) and 27 other tissues See more
    Orthologs

    Genomic context

    See Bcas2 in Genome Data Viewer
    Location:
    3; 3 F2.2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (103171660..103179163)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (102975634..102983086)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene adenosine monophosphate deaminase 1 Neighboring gene DENN/MADD domain containing 2C Neighboring gene predicted gene, 40113 Neighboring gene tripartite motif-containing 33

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC7712

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA splicing, via spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    colocalizes_with DNA replication factor A complex ISO
    Inferred from Sequence Orthology
    more info
     
    Prp19 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    U2-type catalytic step 2 spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    nuclear speck ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    spliceosomal complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    pre-mRNA-splicing factor SPF27
    Names
    DNA amplified in mammary carcinoma 1 protein
    breast carcinoma-amplified sequence 2 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356330.1NP_001343259.1  pre-mRNA-splicing factor SPF27 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC150894
      Conserved Domains (1) summary
      pfam05700
      Location:11197
      BCAS2; Breast carcinoma amplified sequence 2 (BCAS2)
    2. NM_001356331.1NP_001343260.1  pre-mRNA-splicing factor SPF27 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC150894
      Conserved Domains (1) summary
      pfam05700
      Location:1149
      BCAS2; Breast carcinoma amplified sequence 2 (BCAS2)
    3. NM_026602.4NP_080878.2  pre-mRNA-splicing factor SPF27 isoform 1

      See identical proteins and their annotated locations for NP_080878.2

      Status: VALIDATED

      Source sequence(s)
      AC150894
      Consensus CDS
      CCDS17691.1
      UniProtKB/Swiss-Prot
      Q9D287
      Related
      ENSMUSP00000005830.8, ENSMUST00000005830.14
      Conserved Domains (1) summary
      pfam05700
      Location:11214
      BCAS2; Breast carcinoma amplified sequence 2 (BCAS2)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

      Range
      103171660..103179163
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006501965.1XP_006502028.1  pre-mRNA-splicing factor SPF27 isoform X1

      Conserved Domains (1) summary
      pfam05700
      Location:11197
      BCAS2; Breast carcinoma amplified sequence 2 (BCAS2)
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