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    PCP4L1 Purkinje cell protein 4 like 1 [ Homo sapiens (human) ]

    Gene ID: 654790, updated on 17-Jun-2019

    Summary

    Official Symbol
    PCP4L1provided by HGNC
    Official Full Name
    Purkinje cell protein 4 like 1provided by HGNC
    Primary source
    HGNC:HGNC:20448
    See related
    Ensembl:ENSG00000248485
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    IQM1
    Expression
    Biased expression in urinary bladder (RPKM 16.5), brain (RPKM 14.3) and 10 other tissues See more
    Orthologs

    Genomic context

    See PCP4L1 in Genome Data Viewer
    Location:
    1q23.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (161258734..161285450)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (161228517..161255240)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene translocase of outer mitochondrial membrane 40 like Neighboring gene microRNA 5187 Neighboring gene nuclear receptor subfamily 1 group I member 3 Neighboring gene uncharacterized LOC105371472 Neighboring gene uncharacterized LOC107985221 Neighboring gene myelin protein zero

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    NHGRI GWAS Catalog

    Description
    Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
    NHGRI GWA Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    Purkinje cell protein 4-like protein 1
    Names
    PCP4-like protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102566.2NP_001096036.1  Purkinje cell protein 4-like protein 1

      See identical proteins and their annotated locations for NP_001096036.1

      Status: VALIDATED

      Source sequence(s)
      BC028905, CD237602, CN283207
      Consensus CDS
      CCDS53412.1
      UniProtKB/Swiss-Prot
      A6NKN8
      Related
      ENSP00000426296.1, ENST00000504449.2

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

      Range
      161258734..161285450
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017002154.2XP_016857643.1  Purkinje cell protein 4-like protein 1 isoform X1

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