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    PAX8-AS1 PAX8 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 654433, updated on 17-Jun-2019

    Summary

    Official Symbol
    PAX8-AS1provided by HGNC
    Official Full Name
    PAX8 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:49271
    See related
    Ensembl:ENSG00000189223
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in thyroid (RPKM 22.6), adrenal (RPKM 9.3) and 19 other tissues See more

    Genomic context

    See PAX8-AS1 in Genome Data Viewer
    Location:
    2q14.1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (113235527..113267023)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (113993104..114024600)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor antagonist Neighboring gene pleckstrin and Sec7 domain containing 4 Neighboring gene paired box 8 Neighboring gene PAX8 promoter region Neighboring gene uncharacterized LOC105373567 Neighboring gene uncharacterized LOC101927400

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Clone Names

    • FLJ17200, FLJ31793, FLJ44467, DKFZp547P134, DKFZp686E10196

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015377.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      BC036699, BF056746
      Related
      ENST00000436293.6
    2. NR_047570.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks several segments and has an alternate terminal exon compared to variant 1.
      Source sequence(s)
      AK056052, AK130275, AY007128, CA416382, DA573927
      Related
      ENST00000437551.5

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

      Range
      113235527..113267023
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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