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    CTAGE1 cutaneous T cell lymphoma-associated antigen 1 [ Homo sapiens (human) ]

    Gene ID: 64693, updated on 17-Jun-2019

    Summary

    Official Symbol
    CTAGE1provided by HGNC
    Official Full Name
    cutaneous T cell lymphoma-associated antigen 1provided by HGNC
    Primary source
    HGNC:HGNC:24346
    See related
    Ensembl:ENSG00000212710 MIM:608856
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CTAGE; CT21.1; CT21.2; CTAGE-1; CTAGE-2
    Orthologs

    Genomic context

    See CTAGE1 in Genome Data Viewer
    Location:
    18q11.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 18 NC_000018.10 (22413599..22417915, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (19993564..19997878, complement)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927548 Neighboring gene uncharacterized LOC105372019 Neighboring gene ATPase copper transporting beta pseudogene 1 Neighboring gene Sharpr-MPRA regulatory region 6476

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Phenotypes

    NHGRI GWAS Catalog

    Description
    Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.
    NHGRI GWA Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    ER to Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    biological_process ND
    No biological Data available
    more info
     
    cargo loading into vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein secretion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    endoplasmic reticulum exit site IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    cTAGE family member 2
    Names
    cancer/testis antigen 21.2
    cancer/testis antigen family 21, member 1
    cancer/testis antigen family 21, member 2
    cutaneous T-cell lymphoma-associated antigen 2
    protein cTAGE-2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172241.3NP_758441.2  cTAGE family member 2

      See identical proteins and their annotated locations for NP_758441.2

      Status: VALIDATED

      Source sequence(s)
      AC099849
      Consensus CDS
      CCDS45837.1
      UniProtKB/Swiss-Prot
      Q96RT6
      UniProtKB/TrEMBL
      Q8NEG8
      Related
      ENSP00000375220.2, ENST00000391403.3
      Conserved Domains (1) summary
      cl25732
      Location:55350
      SMC_N; RecF/RecN/SMC N terminal domain

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p13 Primary Assembly

      Range
      22413599..22417915 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p13 PATCHES

    Genomic

    1. NW_014040928.1 Reference GRCh38.p13 PATCHES

      Range
      24920..29236 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_022663.1: Suppressed sequence

      Description
      NM_022663.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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