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    LOC646588 uncharacterized LOC646588 [ Homo sapiens (human) ]

    Gene ID: 646588, updated on 8-Jul-2019

    Summary

    Gene symbol
    LOC646588
    Gene description
    uncharacterized LOC646588
    See related
    Ensembl:ENSG00000223561
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in salivary gland (RPKM 4.3), endometrium (RPKM 0.4) and 4 other tissues See more
    Orthologs

    Genomic context

    See LOC646588 in Genome Data Viewer
    Location:
    7p15.2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (25593301..25790119, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (25694948..25702806, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375195 Neighboring gene uncharacterized LOC105375194 Neighboring gene uncharacterized LOC105375196 Neighboring gene VISTA enhancer hs1677 Neighboring gene VISTA enhancer hs1600 Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 1 Neighboring gene VISTA enhancer hs1325 Neighboring gene uncharacterized LOC100506236 Neighboring gene VISTA enhancer hs1465

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Homology

    Clone Names

    • AC003090.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_157808.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090, AC005165, DA691079
    2. NR_157809.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090, AC005165
    3. NR_157810.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090, AC005165
    4. NR_157811.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090, AC005165
    5. NR_157812.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090, AC005165
    6. NR_157813.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090, AC005165
    7. NR_157814.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090, AC005165
      Related
      ENST00000456777.6
    8. NR_157815.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090, AC005165
    9. NR_157816.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090, AC005165
    10. NR_157818.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090
      Related
      ENST00000656871.1
    11. NR_157819.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090
      Related
      ENST00000665149.1
    12. NR_157820.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090
      Related
      ENST00000652885.1
    13. NR_157821.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090
      Related
      ENST00000661813.1
    14. NR_157822.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090
      Related
      ENST00000660499.1
    15. NR_157823.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090
      Related
      ENST00000653559.1
    16. NR_157824.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090
    17. NR_157825.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090
      Related
      ENST00000658568.1
    18. NR_157826.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090
      Related
      ENST00000654115.1
    19. NR_157827.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090
      Related
      ENST00000423689.3
    20. NR_157828.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090
      Related
      ENST00000656897.1
    21. NR_157829.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090
      Related
      ENST00000446840.6
    22. NR_157830.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090
      Related
      ENST00000668233.1
    23. NR_157831.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC003090
      Related
      ENST00000669861.1

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

      Range
      25593301..25790119 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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