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    LINC00643 long intergenic non-protein coding RNA 643 [ Homo sapiens (human) ]

    Gene ID: 646113, updated on 15-Jun-2019

    Summary

    Official Symbol
    LINC00643provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 643provided by HGNC
    Primary source
    HGNC:HGNC:44296
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in brain (RPKM 11.4), placenta (RPKM 2.4) and 2 other tissues See more

    Genomic context

    See LINC00643 in Genome Data Viewer
    Location:
    14q23.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCh38.p12 (GCF_000001405.38) 14 NC_000014.9 (62117357..62134186)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (62583849..62600904)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 4I1 pseudogene 1 Neighboring gene synaptotagmin 16 Neighboring gene molybdenum cofactor synthesis 3 pseudogene 1 Neighboring gene tubulin alpha 1c pseudogene Neighboring gene long intergenic non-protein coding RNA 644 Neighboring gene uncharacterized LOC105370529 Neighboring gene uncharacterized LOC105370528

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Clone Names

    • FLJ18510, FLJ37214, FLJ39142, FLJ43390

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015358.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL390816

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

      Range
      62117357..62134186
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001039785.1: Suppressed sequence

      Description
      NM_001039785.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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