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    C1orf112 chromosome 1 open reading frame 112 [ Homo sapiens (human) ]

    Gene ID: 55732, updated on 15-Jun-2019

    Summary

    Official Symbol
    C1orf112provided by HGNC
    Official Full Name
    chromosome 1 open reading frame 112provided by HGNC
    Primary source
    HGNC:HGNC:25565
    See related
    Ensembl:ENSG00000000460
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in testis (RPKM 5.7), lymph node (RPKM 3.2) and 24 other tissues See more
    Orthologs

    Genomic context

    See C1orf112 in Genome Data Viewer
    Location:
    1q24.2
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    109 current GRCh38.p12 (GCF_000001405.38) 1 NC_000001.11 (169794730..169854080)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (169763224..169822229)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene selectin E Neighboring gene uncharacterized LOC101928628 Neighboring gene methyltransferase like 18 Neighboring gene RNA, 7SL, cytoplasmic 333, pseudogene Neighboring gene SCY1 like pseudokinase 3 Neighboring gene VISTA enhancer hs1442 Neighboring gene kinesin associated protein 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • FLJ10706, FLJ13470, MGC130018, MGC130019

    General protein information

    Preferred Names
    uncharacterized protein C1orf112

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001320047.2NP_001306976.1  uncharacterized protein C1orf112 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL031297, BC091516, DA770714, DC401980
      Consensus CDS
      CCDS1285.1
      UniProtKB/Swiss-Prot
      Q9NSG2
      UniProtKB/TrEMBL
      A0A024R922
      Related
      ENSP00000352276.4, ENST00000359326.9
      Conserved Domains (1) summary
      pfam14868
      Location:176728
      DUF4487; Domain of unknown function (DUF4487)
    2. NM_001320048.1NP_001306977.1  uncharacterized protein C1orf112 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK001568, AK303296, BC091516, DC401980
      UniProtKB/Swiss-Prot
      Q9NSG2
      UniProtKB/TrEMBL
      B4E0A9
      Conserved Domains (1) summary
      pfam14868
      Location:41593
      DUF4487; Domain of unknown function (DUF4487)
    3. NM_001320050.2NP_001306979.1  uncharacterized protein C1orf112 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AK096493, BC011012, BC011445, CB159947, DC401980
      Consensus CDS
      CCDS81400.1
      UniProtKB/Swiss-Prot
      Q9NSG2
      UniProtKB/TrEMBL
      A0A1B0GV14
      Related
      ENSP00000490333.1, ENST00000496973.5
    4. NM_001320051.1NP_001306980.1  uncharacterized protein C1orf112 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AL354614, BC011445, BC091516, CB159947
      Consensus CDS
      CCDS81401.1
      UniProtKB/Swiss-Prot
      Q9NSG2
      UniProtKB/TrEMBL
      A0A1B0GUP7
      Related
      ENSP00000490194.1, ENST00000472795.5
    5. NM_001363739.1NP_001350668.1  uncharacterized protein C1orf112 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AL021940, AL031297
      Consensus CDS
      CCDS86030.1
      Conserved Domains (1) summary
      pfam14868
      Location:1405
      DUF4487; Domain of unknown function (DUF4487)
    6. NM_001366768.1NP_001353697.1  uncharacterized protein C1orf112 isoform 6

      Status: VALIDATED

      Source sequence(s)
      AL021940, AL031297
    7. NM_001366769.1NP_001353698.1  uncharacterized protein C1orf112 isoform 7

      Status: VALIDATED

      Source sequence(s)
      AL021940, AL031297
      Conserved Domains (1) summary
      pfam14868
      Location:234786
      DUF4487; Domain of unknown function (DUF4487)
    8. NM_001366770.1NP_001353699.1  uncharacterized protein C1orf112 isoform 8

      Status: VALIDATED

      Source sequence(s)
      AL021940, AL031297
    9. NM_001366771.1NP_001353700.1  uncharacterized protein C1orf112 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AL021940, AL031297
      Conserved Domains (1) summary
      pfam14868
      Location:1405
      DUF4487; Domain of unknown function (DUF4487)
    10. NM_001366772.1NP_001353701.1  uncharacterized protein C1orf112 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AL021940, AL031297
      Conserved Domains (1) summary
      pfam14868
      Location:1405
      DUF4487; Domain of unknown function (DUF4487)
    11. NM_001366773.1NP_001353702.1  uncharacterized protein C1orf112 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AL021940, AL031297
      Conserved Domains (1) summary
      pfam14868
      Location:1405
      DUF4487; Domain of unknown function (DUF4487)

    RNA

    1. NR_159440.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL021940, AL031297

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

      Range
      169794730..169854080
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017001722.2XP_016857211.1  uncharacterized protein C1orf112 isoform X2

    2. XM_017001723.1XP_016857212.1  uncharacterized protein C1orf112 isoform X3

    3. XM_011509735.2XP_011508037.1  uncharacterized protein C1orf112 isoform X4

      See identical proteins and their annotated locations for XP_011508037.1

      UniProtKB/Swiss-Prot
      Q9NSG2
      Related
      ENSP00000389257.3, ENST00000413811.3
      Conserved Domains (1) summary
      pfam14868
      Location:1405
      DUF4487; Domain of unknown function (DUF4487)

    RNA

    1. XR_921872.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_018186.3: Suppressed sequence

      Description
      NM_018186.3: This RefSeq has been removed because currently there is insufficient support for the transcript.
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