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    BIVM basic, immunoglobulin-like variable motif containing [ Homo sapiens (human) ]

    Gene ID: 54841, updated on 15-Jun-2019

    Summary

    Official Symbol
    BIVMprovided by HGNC
    Official Full Name
    basic, immunoglobulin-like variable motif containingprovided by HGNC
    Primary source
    HGNC:HGNC:16034
    See related
    Ensembl:ENSG00000134897
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in kidney (RPKM 9.2), heart (RPKM 8.2) and 25 other tissues See more
    Orthologs

    Genomic context

    See BIVM in Genome Data Viewer
    Location:
    13q33.1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109 current GRCh38.p12 (GCF_000001405.38) 13 NC_000013.11 (102799049..102841538)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (103451399..103493888)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 168 Neighboring gene uncharacterized LOC105370337 Neighboring gene testis expressed 30 Neighboring gene protein O-glucosyltransferase 2 Neighboring gene BIVM-ERCC5 readthrough Neighboring gene RNY5 pseudogene 8 Neighboring gene ERCC excision repair 5, endonuclease Neighboring gene methyltransferase like 21E, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Readthrough BIVM-ERCC5

    Readthrough gene: BIVM-ERCC5, Included gene: ERCC5

    Homology

    Clone Names

    • FLJ44301, FLJ44556, MGC133326

    Gene Ontology Provided by GOA

    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    extracellular space HDA PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    basic immunoglobulin-like variable motif-containing protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001159596.2NP_001153068.1  basic immunoglobulin-like variable motif-containing protein isoform b

      See identical proteins and their annotated locations for NP_001153068.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has multiple differences compared to variant 1. These differences result in a distinct 5' UTR and cause translation initiation at a downstream start codon, compared to variant 1. The encoded protein (isoform b) is shorter than isoform a.
      Source sequence(s)
      AF411385, BC112339, GD145579
      Consensus CDS
      CCDS53879.1
      UniProtKB/Swiss-Prot
      Q86UB2
      Related
      ENSP00000412794.2, ENST00000448849.3
    2. NM_017693.4NP_060163.2  basic immunoglobulin-like variable motif-containing protein isoform a

      See identical proteins and their annotated locations for NP_060163.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
      Source sequence(s)
      AF411385, GD145579
      Consensus CDS
      CCDS9505.1
      UniProtKB/Swiss-Prot
      Q86UB2
      Related
      ENSP00000257336.1, ENST00000257336.6

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

      Range
      102799119..102841533
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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