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    CDK12 cyclin dependent kinase 12 [ Homo sapiens (human) ]

    Gene ID: 51755, updated on 3-Nov-2024

    Summary

    Official Symbol
    CDK12provided by HGNC
    Official Full Name
    cyclin dependent kinase 12provided by HGNC
    Primary source
    HGNC:HGNC:24224
    See related
    Ensembl:ENSG00000167258 MIM:615514; AllianceGenome:HGNC:24224
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CRK7; CRKR; CRKRS
    Summary
    Enables RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin binding activity. Involved in several processes, including positive regulation of transcription elongation by RNA polymerase II; protein autophosphorylation; and regulation of MAP kinase activity. Located in nuclear speck. Part of cyclin K-CDK12 complex. Biomarker of gastric adenocarcinoma; hepatocellular carcinoma; and stomach cancer. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in testis (RPKM 8.6), bone marrow (RPKM 8.1) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See CDK12 in Genome Data Viewer
    Location:
    17q12
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (39461486..39567559)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (40325392..40431128)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (37617739..37690797)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene F-box and leucine rich repeat protein 20 Neighboring gene microRNA 548BC Neighboring gene MPRA-validated peak2834 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:37489325-37489835 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:37493495-37494252 Neighboring gene Sharpr-MPRA regulatory region 12086 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:37557132-37557424 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8453 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8456 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8455 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8454 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:37558864-37559028 Neighboring gene mediator complex subunit 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr17:37618166-37619365 Neighboring gene U6 spliceosomal RNA Neighboring gene RNA, U6 small nuclear 233, pseudogene Neighboring gene uncharacterized LOC105371770 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8457 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:37730809-37731383 Neighboring gene uncharacterized LOC105371771

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • KIAA0904

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables RNA polymerase II CTD heptapeptide repeat kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables RNA polymerase II CTD heptapeptide repeat kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables RNA polymerase II CTD heptapeptide repeat kinase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables cyclin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables cyclin binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables cyclin-dependent protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein kinase binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein serine kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of cyclin K-CDK12 complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    part_of cyclin/CDK positive transcription elongation factor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of nuclear cyclin-dependent protein kinase holoenzyme complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in nuclear speck IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
     
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    cyclin-dependent kinase 12
    Names
    CDC2-related protein kinase 7
    Cdc2-related kinase, arginine/serine-rich
    cell division cycle 2-related protein kinase 7
    cell division protein kinase 12
    NP_055898.1
    NP_057591.2
    XP_005257513.1
    XP_011523195.1
    XP_011523196.1
    XP_011523197.1
    XP_011523199.1
    XP_011523200.1
    XP_011523208.1
    XP_011523209.1
    XP_016880242.1
    XP_047292209.1
    XP_047292211.1
    XP_047292212.1
    XP_047292213.1
    XP_047292214.1
    XP_047292215.1
    XP_047292216.1
    XP_047292217.1
    XP_047292218.1
    XP_047292219.1
    XP_047292220.1
    XP_047292221.1
    XP_047292222.1
    XP_047292223.1
    XP_047292224.1
    XP_047292225.1
    XP_047292226.1
    XP_047292228.1
    XP_047292229.1
    XP_047292230.1
    XP_047292231.1
    XP_047292232.1
    XP_047292233.1
    XP_047292234.1
    XP_047292235.1
    XP_047292236.1
    XP_047292237.1
    XP_047292238.1
    XP_047292239.1
    XP_047292240.1
    XP_047292241.1
    XP_047292242.1
    XP_047292243.1
    XP_047292244.1
    XP_047292245.1
    XP_047292246.1
    XP_047292247.1
    XP_047292248.1
    XP_047292249.1
    XP_054172424.1
    XP_054172425.1
    XP_054172426.1
    XP_054172427.1
    XP_054172428.1
    XP_054172429.1
    XP_054172430.1
    XP_054172431.1
    XP_054172432.1
    XP_054172433.1
    XP_054172434.1
    XP_054172435.1
    XP_054172436.1
    XP_054172437.1
    XP_054172438.1
    XP_054172439.1
    XP_054172440.1
    XP_054172441.1
    XP_054172442.1
    XP_054172443.1
    XP_054172444.1
    XP_054172445.1
    XP_054172446.1
    XP_054172447.1
    XP_054172448.1
    XP_054172449.1
    XP_054172450.1
    XP_054172451.1
    XP_054172452.1
    XP_054172453.1
    XP_054172454.1
    XP_054172455.1
    XP_054172456.1
    XP_054172457.1
    XP_054172458.1
    XP_054172459.1
    XP_054172460.1
    XP_054172461.1
    XP_054172462.1
    XP_054172463.1
    XP_054172464.1
    XP_054172465.1
    XP_054172466.1
    XP_054172467.1
    XP_054172468.1
    XP_054172469.1
    XP_054172470.1
    XP_054172471.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_065324.1 RefSeqGene

      Range
      5001..78059
      Download
      GenBank, FASTA, Sequence Viewer (Graphics), LRG_1413

    mRNA and Protein(s)

    1. NM_015083.4NP_055898.1  cyclin-dependent kinase 12 isoform 2

      See identical proteins and their annotated locations for NP_055898.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. It encodes isoform 2, which is shorter than isoform 1.
      Source sequence(s)
      AC009283, AK302645, BC150265, BE003756, BM557102
      Consensus CDS
      CCDS45666.1
      UniProtKB/TrEMBL
      J3QSD7
      Related
      ENSP00000407720.2, ENST00000430627.6
      Conserved Domains (2) summary
      smart00220
      Location:7271020
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd07864
      Location:7191020
      STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12
    2. NM_016507.4NP_057591.2  cyclin-dependent kinase 12 isoform 1

      See identical proteins and their annotated locations for NP_057591.2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform.
      Source sequence(s)
      AC009283, AF227198, AK302645, BC150265, BE003756, BM557102
      Consensus CDS
      CCDS11337.1
      UniProtKB/Swiss-Prot
      A7E2B2, B4DYX4, B9EIQ6, O94978, Q9NYV4
      UniProtKB/TrEMBL
      J3QSD7
      Related
      ENSP00000398880.4, ENST00000447079.6
      Conserved Domains (2) summary
      smart00220
      Location:7271020
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd07864
      Location:7191020
      STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      39461486..39567559
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047436256.1XP_047292212.1  cyclin-dependent kinase 12 isoform X3

    2. XM_047436261.1XP_047292217.1  cyclin-dependent kinase 12 isoform X3

    3. XM_047436260.1XP_047292216.1  cyclin-dependent kinase 12 isoform X3

    4. XM_011524897.3XP_011523199.1  cyclin-dependent kinase 12 isoform X3

      See identical proteins and their annotated locations for XP_011523199.1

      UniProtKB/TrEMBL
      J3QSD7
      Conserved Domains (1) summary
      cd07864
      Location:7191020
      STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12
    5. XM_047436255.1XP_047292211.1  cyclin-dependent kinase 12 isoform X3

    6. XM_011524895.3XP_011523197.1  cyclin-dependent kinase 12 isoform X3

      See identical proteins and their annotated locations for XP_011523197.1

      UniProtKB/TrEMBL
      J3QSD7
      Conserved Domains (1) summary
      cd07864
      Location:7191020
      STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12
    7. XM_011524893.3XP_011523195.1  cyclin-dependent kinase 12 isoform X3

      See identical proteins and their annotated locations for XP_011523195.1

      UniProtKB/TrEMBL
      J3QSD7
      Conserved Domains (1) summary
      cd07864
      Location:7191020
      STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12
    8. XM_011524894.3XP_011523196.1  cyclin-dependent kinase 12 isoform X3

      See identical proteins and their annotated locations for XP_011523196.1

      UniProtKB/TrEMBL
      J3QSD7
      Conserved Domains (1) summary
      cd07864
      Location:7191020
      STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12
    9. XM_047436258.1XP_047292214.1  cyclin-dependent kinase 12 isoform X3

    10. XM_011524906.3XP_011523208.1  cyclin-dependent kinase 12 isoform X3

      See identical proteins and their annotated locations for XP_011523208.1

      UniProtKB/TrEMBL
      J3QSD7
      Conserved Domains (1) summary
      cd07864
      Location:7191020
      STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12
    11. XM_047436259.1XP_047292215.1  cyclin-dependent kinase 12 isoform X3

    12. XM_011524898.3XP_011523200.1  cyclin-dependent kinase 12 isoform X3

      See identical proteins and their annotated locations for XP_011523200.1

      UniProtKB/TrEMBL
      J3QSD7
      Conserved Domains (1) summary
      cd07864
      Location:7191020
      STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12
    13. XM_047436257.1XP_047292213.1  cyclin-dependent kinase 12 isoform X3

    14. XM_047436278.1XP_047292234.1  cyclin-dependent kinase 12 isoform X5

    15. XM_047436267.1XP_047292223.1  cyclin-dependent kinase 12 isoform X5

    16. XM_047436277.1XP_047292233.1  cyclin-dependent kinase 12 isoform X5

    17. XM_047436268.1XP_047292224.1  cyclin-dependent kinase 12 isoform X5

    18. XM_047436265.1XP_047292221.1  cyclin-dependent kinase 12 isoform X5

    19. XM_047436266.1XP_047292222.1  cyclin-dependent kinase 12 isoform X5

    20. XM_047436270.1XP_047292226.1  cyclin-dependent kinase 12 isoform X5

    21. XM_047436273.1XP_047292229.1  cyclin-dependent kinase 12 isoform X5

    22. XM_047436275.1XP_047292231.1  cyclin-dependent kinase 12 isoform X5

    23. XM_047436276.1XP_047292232.1  cyclin-dependent kinase 12 isoform X5

    24. XM_047436274.1XP_047292230.1  cyclin-dependent kinase 12 isoform X5

    25. XM_047436279.1XP_047292235.1  cyclin-dependent kinase 12 isoform X5

    26. XM_047436269.1XP_047292225.1  cyclin-dependent kinase 12 isoform X5

    27. XM_047436272.1XP_047292228.1  cyclin-dependent kinase 12 isoform X5

    28. XM_011524907.3XP_011523209.1  cyclin-dependent kinase 12 isoform X7

      UniProtKB/TrEMBL
      H0YLT2, J3QSD7
      Related
      ENSP00000453329.2, ENST00000559663.2
      Conserved Domains (2) summary
      smart00220
      Location:7271020
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd07864
      Location:7191020
      STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12
    29. XM_047436287.1XP_047292243.1  cyclin-dependent kinase 12 isoform X7

      UniProtKB/TrEMBL
      H0YLT2
    30. XM_047436288.1XP_047292244.1  cyclin-dependent kinase 12 isoform X7

      UniProtKB/TrEMBL
      H0YLT2
    31. XM_047436289.1XP_047292245.1  cyclin-dependent kinase 12 isoform X7

      UniProtKB/TrEMBL
      H0YLT2
    32. XM_047436293.1XP_047292249.1  cyclin-dependent kinase 12 isoform X9

    33. XM_047436262.1XP_047292218.1  cyclin-dependent kinase 12 isoform X4

    34. XM_047436264.1XP_047292220.1  cyclin-dependent kinase 12 isoform X4

    35. XM_047436263.1XP_047292219.1  cyclin-dependent kinase 12 isoform X4

    36. XM_047436282.1XP_047292238.1  cyclin-dependent kinase 12 isoform X6

    37. XM_047436283.1XP_047292239.1  cyclin-dependent kinase 12 isoform X6

    38. XM_047436280.1XP_047292236.1  cyclin-dependent kinase 12 isoform X6

    39. XM_047436281.1XP_047292237.1  cyclin-dependent kinase 12 isoform X6

    40. XM_047436284.1XP_047292240.1  cyclin-dependent kinase 12 isoform X6

    41. XM_047436285.1XP_047292241.1  cyclin-dependent kinase 12 isoform X6

    42. XM_047436286.1XP_047292242.1  cyclin-dependent kinase 12 isoform X6

    43. XM_047436290.1XP_047292246.1  cyclin-dependent kinase 12 isoform X8

    44. XM_017024753.3XP_016880242.1  cyclin-dependent kinase 12 isoform X8

      UniProtKB/TrEMBL
      J3QSD7
    45. XM_047436292.1XP_047292248.1  cyclin-dependent kinase 12 isoform X8

    46. XM_047436291.1XP_047292247.1  cyclin-dependent kinase 12 isoform X8

      Related
      ENSP00000464641.1, ENST00000584632.5
    47. XM_005257456.5XP_005257513.1  cyclin-dependent kinase 12 isoform X1

      UniProtKB/TrEMBL
      J3QSD7
      Conserved Domains (2) summary
      smart00220
      Location:7261019
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd07864
      Location:7181019
      STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12
    48. XM_047436253.1XP_047292209.1  cyclin-dependent kinase 12 isoform X2

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      40325392..40431128
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054316455.1XP_054172430.1  cyclin-dependent kinase 12 isoform X3

    2. XM_054316463.1XP_054172438.1  cyclin-dependent kinase 12 isoform X3

    3. XM_054316462.1XP_054172437.1  cyclin-dependent kinase 12 isoform X3

    4. XM_054316454.1XP_054172429.1  cyclin-dependent kinase 12 isoform X3

    5. XM_054316453.1XP_054172428.1  cyclin-dependent kinase 12 isoform X3

    6. XM_054316458.1XP_054172433.1  cyclin-dependent kinase 12 isoform X3

    7. XM_054316451.1XP_054172426.1  cyclin-dependent kinase 12 isoform X3

    8. XM_054316452.1XP_054172427.1  cyclin-dependent kinase 12 isoform X3

    9. XM_054316459.1XP_054172434.1  cyclin-dependent kinase 12 isoform X3

    10. XM_054316457.1XP_054172432.1  cyclin-dependent kinase 12 isoform X3

    11. XM_054316460.1XP_054172435.1  cyclin-dependent kinase 12 isoform X3

    12. XM_054316461.1XP_054172436.1  cyclin-dependent kinase 12 isoform X3

    13. XM_054316456.1XP_054172431.1  cyclin-dependent kinase 12 isoform X3

    14. XM_054316479.1XP_054172454.1  cyclin-dependent kinase 12 isoform X5

    15. XM_054316469.1XP_054172444.1  cyclin-dependent kinase 12 isoform X5

    16. XM_054316478.1XP_054172453.1  cyclin-dependent kinase 12 isoform X5

    17. XM_054316470.1XP_054172445.1  cyclin-dependent kinase 12 isoform X5

    18. XM_054316467.1XP_054172442.1  cyclin-dependent kinase 12 isoform X5

    19. XM_054316468.1XP_054172443.1  cyclin-dependent kinase 12 isoform X5

    20. XM_054316472.1XP_054172447.1  cyclin-dependent kinase 12 isoform X5

    21. XM_054316474.1XP_054172449.1  cyclin-dependent kinase 12 isoform X5

    22. XM_054316476.1XP_054172451.1  cyclin-dependent kinase 12 isoform X5

    23. XM_054316477.1XP_054172452.1  cyclin-dependent kinase 12 isoform X5

    24. XM_054316475.1XP_054172450.1  cyclin-dependent kinase 12 isoform X5

    25. XM_054316480.1XP_054172455.1  cyclin-dependent kinase 12 isoform X5

    26. XM_054316471.1XP_054172446.1  cyclin-dependent kinase 12 isoform X5

    27. XM_054316473.1XP_054172448.1  cyclin-dependent kinase 12 isoform X5

    28. XM_054316489.1XP_054172464.1  cyclin-dependent kinase 12 isoform X7

      UniProtKB/TrEMBL
      H0YLT2
    29. XM_054316488.1XP_054172463.1  cyclin-dependent kinase 12 isoform X7

      UniProtKB/TrEMBL
      H0YLT2
    30. XM_054316490.1XP_054172465.1  cyclin-dependent kinase 12 isoform X7

      UniProtKB/TrEMBL
      H0YLT2
    31. XM_054316491.1XP_054172466.1  cyclin-dependent kinase 12 isoform X7

      UniProtKB/TrEMBL
      H0YLT2
    32. XM_054316496.1XP_054172471.1  cyclin-dependent kinase 12 isoform X9

    33. XM_054316464.1XP_054172439.1  cyclin-dependent kinase 12 isoform X4

    34. XM_054316466.1XP_054172441.1  cyclin-dependent kinase 12 isoform X4

    35. XM_054316465.1XP_054172440.1  cyclin-dependent kinase 12 isoform X4

    36. XM_054316483.1XP_054172458.1  cyclin-dependent kinase 12 isoform X6

    37. XM_054316484.1XP_054172459.1  cyclin-dependent kinase 12 isoform X6

    38. XM_054316481.1XP_054172456.1  cyclin-dependent kinase 12 isoform X6

    39. XM_054316482.1XP_054172457.1  cyclin-dependent kinase 12 isoform X6

    40. XM_054316485.1XP_054172460.1  cyclin-dependent kinase 12 isoform X6

    41. XM_054316486.1XP_054172461.1  cyclin-dependent kinase 12 isoform X6

    42. XM_054316487.1XP_054172462.1  cyclin-dependent kinase 12 isoform X6

    43. XM_054316492.1XP_054172467.1  cyclin-dependent kinase 12 isoform X8

    44. XM_054316493.1XP_054172468.1  cyclin-dependent kinase 12 isoform X8

    45. XM_054316495.1XP_054172470.1  cyclin-dependent kinase 12 isoform X8

    46. XM_054316494.1XP_054172469.1  cyclin-dependent kinase 12 isoform X8

    47. XM_054316449.1XP_054172424.1  cyclin-dependent kinase 12 isoform X1

    48. XM_054316450.1XP_054172425.1  cyclin-dependent kinase 12 isoform X2