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    ANKRD39 ankyrin repeat domain 39 [ Homo sapiens (human) ]

    Gene ID: 51239, updated on 17-Jun-2019

    Summary

    Official Symbol
    ANKRD39provided by HGNC
    Official Full Name
    ankyrin repeat domain 39provided by HGNC
    Primary source
    HGNC:HGNC:28640
    See related
    Ensembl:ENSG00000213337
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in brain (RPKM 6.7), adrenal (RPKM 6.0) and 25 other tissues See more
    Orthologs

    Genomic context

    See ANKRD39 in Genome Data Viewer
    Location:
    2q11.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (96847990..96858016, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (97513722..97523756, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 3 Neighboring gene ankyrin repeat domain 23 Neighboring gene semaphorin 4C Neighboring gene family with sequence similarity 178 member B Neighboring gene uncharacterized LOC101927053

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC41816

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    ankyrin repeat domain-containing protein 39

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_016466.6NP_057550.3  ankyrin repeat domain-containing protein 39

      See identical proteins and their annotated locations for NP_057550.3

      Status: VALIDATED

      Source sequence(s)
      BU626151, BX091421, DA769410
      Consensus CDS
      CCDS2028.1
      UniProtKB/Swiss-Prot
      Q53RE8
      Related
      ENSP00000377170.4, ENST00000393537.5
      Conserved Domains (2) summary
      cd00204
      Location:38150
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:6494
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

      Range
      96847990..96858016 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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