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    Akr1c19 aldo-keto reductase family 1, member C19 [ Mus musculus (house mouse) ]

    Gene ID: 432720, updated on 31-Jan-2019

    Summary

    Official Symbol
    Akr1c19provided by MGI
    Official Full Name
    aldo-keto reductase family 1, member C19provided by MGI
    Primary source
    MGI:MGI:2653678
    See related
    Ensembl:ENSMUSG00000071551
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1810010N06Rik
    Expression
    Biased expression in genital fat pad adult (RPKM 9.8), kidney adult (RPKM 5.1) and 11 other tissues See more

    Genomic context

    See Akr1c19 in Genome Data Viewer
    Location:
    13; 13 A1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (4233503..4248361)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (4232986..4247605)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene aldo-keto reductase family 1, member C13 Neighboring gene nuclear encoded tRNA lysine 6 (anticodon CTT) Neighboring gene MARCKS-like 1, pseudogene 4 Neighboring gene predicted gene, 40656

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    alcohol dehydrogenase (NADP+) activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    alditol:NADP+ 1-oxidoreductase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ketosteroid monooxygenase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    oxidoreductase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    steroid dehydrogenase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    steroid metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    aldo-keto reductase family 1, member C19

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013785.3NP_001013807.2  aldo-keto reductase family 1, member C19

      See identical proteins and their annotated locations for NP_001013807.2

      Status: VALIDATED

      Source sequence(s)
      BG062632, BG073853, BG086571
      Consensus CDS
      CCDS26221.1
      UniProtKB/TrEMBL
      G3X9Y6
      Related
      ENSMUSP00000080074.6, ENSMUST00000081326.6
      Conserved Domains (2) summary
      COG0656
      Location:8307
      ARA1; Aldo/keto reductase, related to diketogulonate reductase [Secondary metabolites biosynthesis, transport and catabolism]
      COG0667
      Location:11310
      Tas; Predicted oxidoreductase (related to aryl-alcohol dehydrogenase) [General function prediction only]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

      Range
      4233503..4248361
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_873094.2 RNA Sequence

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