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    LINC01205 long intergenic non-protein coding RNA 1205 [ Homo sapiens (human) ]

    Gene ID: 401082, updated on 17-Jun-2019

    Summary

    Official Symbol
    LINC01205provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1205provided by HGNC
    Primary source
    HGNC:HGNC:49636
    See related
    Ensembl:ENSG00000228980
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more

    Genomic context

    See LINC01205 in Genome Data Viewer
    Location:
    3q13.13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (109409990..109495167)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (109128837..109214014)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene developmental pluripotency associated 4 Neighboring gene chromosome 12 open reading frame 29 pseudogene Neighboring gene H3 histone family member 3A pseudogene 3 Neighboring gene peptidylprolyl isomerase A pseudogene 15 Neighboring gene microRNA 4445 Neighboring gene DIM1 dimethyladenosine transferase 1 homolog pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Phenotypes

    NHGRI GWAS Catalog

    Description
    Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.
    NHGRI GWA Catalog

    General gene information

    Markers

    Clone Names

    • FLJ25363

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109841.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant This variant (2) uses several alternate exons at the 3' end resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC092905, AK058092
      Related
      ENST00000497996.1
    2. NR_109842.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC092905

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

      Range
      109409990..109495167
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001145553.1: Suppressed sequence

      Description
      NM_001145553.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Support Center