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    C1orf226 chromosome 1 open reading frame 226 [ Homo sapiens (human) ]

    Gene ID: 400793, updated on 17-Jun-2019

    Summary

    Official Symbol
    C1orf226provided by HGNC
    Official Full Name
    chromosome 1 open reading frame 226provided by HGNC
    Primary source
    HGNC:HGNC:34351
    See related
    Ensembl:ENSG00000239887
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in colon (RPKM 4.5), adrenal (RPKM 4.4) and 23 other tissues See more
    Orthologs

    Genomic context

    See C1orf226 in Genome Data Viewer
    Location:
    1q23.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (162378841..162386818)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (162348696..162356608)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene nitric oxide synthase 1 adaptor protein Neighboring gene microRNA 556 Neighboring gene spermatogenesis associated 46 Neighboring gene SH2 domain containing 1B Neighboring gene SLAM family member 6 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Potential readthrough

    Included gene: NOS1AP

    Homology

    Clone Names

    • FLJ13137, FLJ43132, FLJ55152

    General protein information

    Preferred Names
    uncharacterized protein C1orf226

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001085375.2NP_001078844.1  uncharacterized protein C1orf226 isoform 2

      See identical proteins and their annotated locations for NP_001078844.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has multiple differences, compared to variant 1. The resulting protein (isoform 2) has a shorter N-terminus when it is compared to variant 1.
      Source sequence(s)
      AI480219, AK125122, AL512785
      Consensus CDS
      CCDS53422.1
      UniProtKB/Swiss-Prot
      A1L170
      Related
      ENSP00000437071.1, ENST00000458626.4
      Conserved Domains (1) summary
      pfam15429
      Location:1272
      DUF4628; Domain of unknown function (DUF4628)
    2. NM_001135240.2NP_001128712.1  uncharacterized protein C1orf226 isoform 1

      See identical proteins and their annotated locations for NP_001128712.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer protein (isoform 1).
      Source sequence(s)
      AI480219, AK293907, AL512785, DR000934
      Consensus CDS
      CCDS44268.1
      UniProtKB/Swiss-Prot
      A1L170
      Related
      ENSP00000413150.2, ENST00000426197.2
      Conserved Domains (1) summary
      pfam15429
      Location:44315
      DUF4628; Domain of unknown function (DUF4628)

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

      Range
      162378841..162386818
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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